Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25110 492 / 3e-175 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 486 / 6e-173 Acyl-ACP thioesterase (.1) AT1G08510 257 / 2e-82 FATB fatty acyl-ACP thioesterases B (.1) AT4G38840 76 / 7e-17 SAUR-like auxin-responsive protein family (.1) AT4G34770 75 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT3G03850 71 / 3e-15 SAUR-like auxin-responsive protein family (.1) AT3G03840 71 / 4e-15 SAUR-like auxin-responsive protein family (.1) AT5G18010 69 / 1e-14 SAUR19, SAUR24 small auxin up RNA 19, SAUR-like auxin-responsive protein family (.1) AT4G38850 69 / 2e-14 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT2G21210 69 / 2e-14 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025912 [exp] 615 / 0 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10011839 [exp] 561 / 0 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 553 / 0 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1) Lus10033072 [exp] 267 / 4e-86 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 267 / 4e-86 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 249 / 2e-79 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 246 / 4e-78 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 234 / 2e-73 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 234 / 2e-73 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245600 [exp] 519 / 0 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1) Potri.012G101500 [exp] 271 / 7e-88 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 262 / 1e-84 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 260 / 2e-83 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 260 / 2e-83 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 258 / 2e-82 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 244 / 8e-78 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 235 / 7e-74 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 219 / 9e-68 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 219 / 1e-67 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase CL0050 [flax] [poplar] PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10038190 pacid=23158447 polypeptide=Lus10038190 locus=Lus10038190.g ID=Lus10038190.BGIv1.0 annot-version=v1.0 ATGGCTATTGGGTTGCCAGGTAGCCTAGCCAAGCAGATCCTCCGAAGAACTAGCTCCGGATCGAGCAAATCATCTTCAAGGTTTCAAAATGTGCCAAAGG GGTTCTTAACAGTTTATGTTGGAGAAGAGTTACAGAGGAAGAGATTTATTGTTCCAGTGTCCTATCTGAGCCAACCTTTGTTTCAGGATCTGCTGAGCAT GGCTGAGGAGGAATTCGGGACTGCCAGCTTCGCTGATAGGCTGCGGCTAGGGAGCTTGACCGAGGATGGATTGTCATATAAGGAGAAGTTCATTGTCAGG TGCTACGAAGTTGGGATTAACAAGACTGCCACTGTTGAGACCATTGCCAATCTCCTGCAGGAGGTAGGGGGTAACCATGCTCAGAGTGTTGGATTCTCCA CAGATGGATTTGCGACGACTCCCACCATGAGGAAGTTGCATCTCATCTGGGTGACTGCTCGTATGCACATTGAAATTTACAGATACCCAGCTTGGAGTGA TGTAGTTGAAATAGAGACGTGGTGCCAAAGTGAAGGTAGGATTGGGACCAGACGTGATTGGATCATAAAGGACTATTCCAATGGTGAAGTTATCGGGAGA GCTACTAGCAAGTGGGTGATGATGAACCAAGATACTAGGCGGCTTCAGAAAGTGACCGATGAAGTTCGTGAGGAGTACTTGGTTTTCTGTCCTCGTGAAC CAAGATTATCATTCCCGGAGGAAAACAACCGTAGCTTAAAAAAGATTCTAAAGCTAGAAGATCCTGCTGAACATTTTAAGCTGGGACTCATACCAAGAAG AGCCGATCTGGACATGAATCAACATGTGAACAACGTTGCCTACATTGGATGGGTTCTTGAGAGCTTGCCTCAAGAAGTCATTGACACATACGAACTACAA ACAATCACCTTAGATTACAGAAGAGAGTGCCAACAAGACGATGTGGTCGATTCGCTCACTAGCATGGAACCTGTTGACGATTCGGAACACCCAGTGAAAG CTAATGGGTCAGCTTTATCAGCTGCCGAGTCCCTGAACTTCCTGCACCTGCTTAGACTGTCAGGTGAGAAAGGGCTGGAGATCAACCGGGGCCGCACAGA ATGGAGAAGGAAACTGGGGAGATGA
AA sequence Show only first row Show all	>Lus10038190 pacid=23158447 polypeptide=Lus10038190 locus=Lus10038190.g ID=Lus10038190.BGIv1.0 annot-version=v1.0 MAIGLPGSLAKQILRRTSSGSSKSSSRFQNVPKGFLTVYVGEELQRKRFIVPVSYLSQPLFQDLLSMAEEEFGTASFADRLRLGSLTEDGLSYKEKFIVR CYEVGINKTATVETIANLLQEVGGNHAQSVGFSTDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDYSNGEVIGR ATSKWVMMNQDTRRLQKVTDEVREEYLVFCPREPRLSFPEENNRSLKKILKLEDPAEHFKLGLIPRRADLDMNQHVNNVAYIGWVLESLPQEVIDTYELQ TITLDYRRECQQDDVVDSLTSMEPVDDSEHPVKANGSALSAAESLNFLHLLRLSGEKGLEINRGRTEWRRKLGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	0	1
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	2.4	0.8384
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	5.2	0.7940
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	5.3	0.8183
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	6.0	0.8110
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	8.8	0.8154
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	11.4	0.8083
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	13.0	0.7912
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	13.9	0.7957
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	16.5	0.7902
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	18.9	0.7976

Compare expression of checked genes

Lus10038190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.