Plant FIBer expression Database

Lus10038194 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07210 358 / 6e-119 unknown protein
AT5G26890 45 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025908
[exp]
557 / 0 AT3G07210 557 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G245700
[exp]
446 / 2e-153 AT3G07210 602 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10038194 pacid=23158478 polypeptide=Lus10038194 locus=Lus10038194.g ID=Lus10038194.BGIv1.0 annot-version=v1.0
ATGGGCATTTTGACTGAGAAATGGTGCTTTTGCAAAGGAGTGAGCAAGTCGGAGAGAACCCAGTCCGCCATTTTCTCCGGCAAGGGTCCGGCCATGGTCA
AGATCTCCGGAGCTGGCGGTCAAGTTTCTGGGACTGGGTTCCTCATCCACCGGAATCTCCTCCTGACAACTCATCTTAATATCCCCTCCGTCGCTGCCGC
CGAGACCCTGGAGATCCGCCTCCAGAAAGGAGTCCCCGCAACCCTAGTCCCCCACAGGTTTTTCATCACAAGTTCAGTGCTGGACCTTACCATAGTTGGT
TTGGATTCCATGGATGGAGACTCTAACGGCCAAGGGAATCATCACCCTCACTTCTTGAAGACCTGTCCTAAGCCAAGCCTTGATCTAGGAAGCGTTGTTT
ACTTTCTAGGATACTTGGAGAAACAAGAGCTTGCTGTTGGTGAAGGGAAGGTCGTTATAGCAACTGACAATTTGGTCAAACTATCCACAGACGGAATCAC
TTGGCGTCCTGGATCTGCTGGATTTGACGCGCAAGGCAATCTCTCCTTCATGATATGCGATCCTATGAAGTTGGCCACATCTCCAACTACTAAATCTTCG
TTAACTTCCTCTTCCTCTTCATCGTCCTCCTGCAAGAAAGATTCTCCCTTGCAGTTCGGTATCCCCATCCCGATTATCTGTGATTGGTTGAACCAGCATT
GGGAAGGAAGCCTAGACGAGCTTACCAAACCGAAAATGCCAATCATCAGATTGATGTCTACTGGCCAGAAGAGCGAGCATTCATGTGCGTCTTTCTCGCT
GAGGCAGGTGTTTAAGTCTGCCGAACCCGATCAAGATGGAACTCCATCATCGTCAAACACTGTATCAAAGACCAGAGACCAAGCCATGCCAGCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGCAGCAGACTAGCTTCATCCATGGGAAAAAGGTGTACTCACAAGGGGCAACATCGCAAAG
GAGTAATGACTACTTTAGCCCTACTGTGTCGTCGATTATGA
AA sequence
>Lus10038194 pacid=23158478 polypeptide=Lus10038194 locus=Lus10038194.g ID=Lus10038194.BGIv1.0 annot-version=v1.0
MGILTEKWCFCKGVSKSERTQSAIFSGKGPAMVKISGAGGQVSGTGFLIHRNLLLTTHLNIPSVAAAETLEIRLQKGVPATLVPHRFFITSSVLDLTIVG
LDSMDGDSNGQGNHHPHFLKTCPKPSLDLGSVVYFLGYLEKQELAVGEGKVVIATDNLVKLSTDGITWRPGSAGFDAQGNLSFMICDPMKLATSPTTKSS
LTSSSSSSSSCKKDSPLQFGIPIPIICDWLNQHWEGSLDELTKPKMPIIRLMSTGQKSEHSCASFSLRQVFKSAEPDQDGTPSSSNTVSKTRDQAMPXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXWSSRLASSMGKRCTHKGQHRKGVMTTLALLCRRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07210 unknown protein Lus10038194
[exp]
0 1
AT2G28070 ABCG3 ATP-binding cassette G3, ABC-2... Lus10037384
[exp]
2.0 0.8569
AT5G19770 TUA3 tubulin alpha-3 (.1) Lus10013765
[exp]
2.2 0.8874
AT4G31590 ATCSLC5, ATCSLC... CELLULOSE-SYNTHASE LIKE C5, Ce... Lus10020120
[exp]
3.5 0.8753
AT1G13170 ORP1D OSBP(oxysterol binding protein... Lus10006237
[exp]
4.2 0.8424
AT3G25700 Eukaryotic aspartyl protease f... Lus10041494
[exp]
4.9 0.8551
AT1G79750 ATNADP-ME4 Arabidopsis thaliana NADP-mali... Lus10038278
[exp]
5.0 0.8554
AT1G79750 ATNADP-ME4 Arabidopsis thaliana NADP-mali... Lus10025823
[exp]
6.3 0.8443
AT4G12420 SKU5 Cupredoxin superfamily protein... Lus10024604
[exp]
7.3 0.8575
AT3G28860 ABCB19, ATMDR11... P-GLYCOPROTEIN 19, MULTIDRUG R... Lus10005249
[exp]
7.5 0.8162
AT1G66150 TMK1 transmembrane kinase 1 (.1) Lus10010472
[exp]
7.9 0.8462

Lus10038194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.