Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07260 247 / 4e-83 FHA SMAD/FHA domain-containing protein (.1) AT3G07220 242 / 5e-80 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245900 [exp] 287 / 7e-98 AT3G07260 248 / 8e-82 SMAD/FHA domain-containing protein (.1) Potri.005G234300 [exp] 41 / 0.0005 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10038196 pacid=23158309 polypeptide=Lus10038196 locus=Lus10038196.g ID=Lus10038196.BGIv1.0 annot-version=v1.0 ATGGGAACTACCGGGGGCAGCGATGTGGAAGCCGGATTCGCGAAGCTGCAAGGCGAGGATTTCGAGTACTATATGCAAACCTACTCCATCGTTTTAGGCC GCAACTCCAAGAAATCCACCGTCGACGTCGACCTAACCAGCTTAGGCGGCGGCATGAACATCTCCCGCCATCACGCCCGCATCTTCTACGACTTCACTCG CCGTCGATTCGCGCTCGAGGTCCTCGGAAAGAACGGATGTTTGGTAGAGGGCGTGCTCCACCTCCCCGGAAACCCTCCCGTCAAGCTCGATTCGCAGGAT CTGCTGCAAATTGGAGACAAGGAATTCTACTTTCTGCTCCCGGTTAGGAGTATTCTAGGCGGAGGATTGGGACCCAGGCATCAGGTGCCAGTGGCGCCGC AGTACGGGTATCATTCCGGTGGGGCGGACAGGGGTTTGGTGCCGTTGAGCGGCTCCGGCAAGAAAGGAAGAGGAAGGGATTTGTACGAGGAGGAGTACGA CGATGATGATGACGACAATGCAGGCATTGGTGGCGGTGGTGGTAGTAGTGGGAAGAAGATAAGGAGAGAAAGCTACGATGGTTACGGATACGCTTCAGGT GCTCCATACAATGGTAAAGTTGGGATGCCTGGTGCATTAGGTCAGTAG
AA sequence Show only first row Show all	>Lus10038196 pacid=23158309 polypeptide=Lus10038196 locus=Lus10038196.g ID=Lus10038196.BGIv1.0 annot-version=v1.0 MGTTGGSDVEAGFAKLQGEDFEYYMQTYSIVLGRNSKKSTVDVDLTSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCLVEGVLHLPGNPPVKLDSQD LLQIGDKEFYFLLPVRSILGGGLGPRHQVPVAPQYGYHSGGADRGLVPLSGSGKKGRGRDLYEEEYDDDDDDNAGIGGGGGSSGKKIRRESYDGYGYASG APYNGKVGMPGALGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	0	1
AT5G08060			unknown protein		Lus10034681 [exp]	1.4	0.8787
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	2.8	0.8361
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	2.8	0.8302
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	6.0	0.8199
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	6.2	0.8321
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	6.7	0.8158
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	8.4	0.8290
AT2G25920			unknown protein		Lus10002434 [exp]	8.5	0.7586
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031130 [exp]	9.5	0.7771
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	10.2	0.8183

Compare expression of checked genes

Lus10038196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.