Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1) AT1G19970 318 / 9e-110 ER lumen protein retaining receptor family protein (.1) AT4G38790 315 / 3e-108 ER lumen protein retaining receptor family protein (.1) AT1G75760 313 / 6e-108 ER lumen protein retaining receptor family protein (.1) AT2G21190 310 / 2e-106 ER lumen protein retaining receptor family protein (.1) AT3G25040 103 / 1e-26 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 99 / 1e-24 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025906 [exp] 518 / 0 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003146 [exp] 423 / 4e-151 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) Lus10022763 [exp] 381 / 9e-135 AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) Lus10017213 [exp] 302 / 2e-103 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 302 / 3e-103 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 300 / 1e-102 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 300 / 2e-102 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10012176 [exp] 248 / 1e-81 AT2G21190 397 / 2e-140 ER lumen protein retaining receptor family protein (.1) Lus10042389 [exp] 212 / 2e-68 AT2G21190 355 / 5e-125 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246700 [exp] 392 / 9e-139 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 320 / 2e-110 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 311 / 8e-107 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 310 / 9e-107 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.017G056000 [exp] 107 / 4e-28 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 102 / 3e-26 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 81 / 3e-18 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10038198 pacid=23158464 polypeptide=Lus10038198 locus=Lus10038198.g ID=Lus10038198.BGIv1.0 annot-version=v1.0 ATGGGTTCGAAGACGAGCGCCGTCAGCAGGAGATCGCCGGCGAAGGCGATTGCCGGATGGGTGGGGCGTCAGTCAACAAGAGTGAAGGTGATGGCCGGAG TGGCGATGTGCTTGTTGACCCTGGTGGGTTTGAAATTGTGTGTCAGAGACCACAGCCATTTCTTCGTCGCCTCCGAATCCATTCACGCCGCCGGGATTCT CGTTCTTGCTTACAAGCTCATCACCACGAAGACCTGCTCCGGGCTATCACTGAGGAGTCAAGCAGTGACGGCATTGTTCGTAGCAGTGAGAATGGGTTGC AGTGTGTTCTTGGAAGCTAGCCGCATCCACACAATGCTGAATTTGGCTACACTGTTGTCCACACTCTGGGTTATATACATGATGAGGTTCAAGTTGAAGT CAACCTACATCAAGGAGCTTGACAGCATGCCCTTATACTATCTGGTCGTCCCTTCTTTCTTCCTTGCTCTCTTCGTCAACCCCTATACTCACTACGGCAT AGTGAGTCAAGTCCTATGGGCCTTTTGCACCTACTTAGAAGCTGTCTCCGTACTTCCCCAGCTCCGATTGATGCAGAACGCAAAGATGATTGAGCCTTTC ACATCTCATTACGTATTCGCACTGGGCATCGCTAGATTCTTGGCTTGTGCACATTGGATCATCATGGTGATTGAAACTCGAGGGAAATATCTGTACATGG TGGGAAGCGGTCACTTGTGGTTTATGGTGGCATTCATGGCAGAAATGGTTCAGACCTTCATATTGGCTGATTTCTGCTACTATTACGTCAAGAGTTTTGT TGCAGGGCAGCTTGTGATGAAGATGCCTGTTTAA
AA sequence Show only first row Show all	>Lus10038198 pacid=23158464 polypeptide=Lus10038198 locus=Lus10038198.g ID=Lus10038198.BGIv1.0 annot-version=v1.0 MGSKTSAVSRRSPAKAIAGWVGRQSTRVKVMAGVAMCLLTLVGLKLCVRDHSHFFVASESIHAAGILVLAYKLITTKTCSGLSLRSQAVTALFVAVRMGC SVFLEASRIHTMLNLATLLSTLWVIYMMRFKLKSTYIKELDSMPLYYLVVPSFFLALFVNPYTHYGIVSQVLWAFCTYLEAVSVLPQLRLMQNAKMIEPF TSHYVFALGIARFLACAHWIIMVIETRGKYLYMVGSGHLWFMVAFMAEMVQTFILADFCYYYVKSFVAGQLVMKMPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25160			ER lumen protein retaining rec...		Lus10038198 [exp]	0	1
					Lus10006897 [exp]	3.5	0.8434
					Lus10041745 [exp]	5.6	0.8979
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	8.4	0.8452
AT3G02990	HSF	ATHSFA1E	heat shock transcription facto...		Lus10005925 [exp]	12.0	0.8479
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	12.1	0.8626
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	13.0	0.8362
AT2G27410	B3		Domain of unknown function (DU...		Lus10035393 [exp]	17.3	0.7246
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	20.2	0.8338
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	24.1	0.7886
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	24.5	0.8254

Compare expression of checked genes

Lus10038198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.