Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25130 64 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025905 [exp] 248 / 1e-80 AT3G25130 122 / 7e-31 unknown protein Lus10022768 [exp] 92 / 7e-21 AT3G25130 106 / 5e-25 unknown protein Lus10011835 [exp] 88 / 5e-20 AT3G25130 104 / 5e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246400 [exp] 70 / 1e-13 AT3G25130 140 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038199 pacid=23158493 polypeptide=Lus10038199 locus=Lus10038199.g ID=Lus10038199.BGIv1.0 annot-version=v1.0 ATGACCGAGGAACCGCCTGATGCAGCAGCAATCATGACATTGGCCACCTTTTTGTATCAAAAGGAGGAGCTTGATGACCAATTAAGTGTTCTTTTGGAGG GAAAAGAAGGAGGAGAAGAAGCAGCCAAGACAGAAAGTGTAAAGTTGAGTAAAGTTAAAGCTGAAGAGCAAAGGGGTGGCTTGTCCAATCCTAGTTCAGA TGACAAAGAAGTCAACTTTTGTTCCCAAAGAAGGTCGCAGTCAGATGTAGGAATGATATCAGCAAGACCATGGAGCAGTCCGTCGAGTTTAGGGAGCTCC AGATCGATGAGAAAGGAGAAAGAGTGGAGGAGGACGCTGGCCTGCAAGCTCTTTGAGGAGAGACATGATAATAATAATAATGCTGCTGACAAGAGTGATG AAGGTATGGACTTGCTTTGGGAGGCATATGAGGAGGAGGAGGAGACAGAGTCCTCTGCTTCAGATAATAAAGTGATCAAGCCTAAGACAACAAAGAGCAA GTCCAGAAAAAGCAACAGGATTGCACACAATTCTTATGCTGATGATGATGATTGTGGAGAAGAAGAGGTTGGGGGTGATGATGATCATGGCGGGAAGTCA TGCTGTTTACAGGCTCTAAAGTTCTCAACTGGGAAGATGAAGCTTGGGATGGGGAAGCCTAATCTGTTGAAGATCTCAAAGGCTATCAAAGGAATTGGAT GGCTGCATCATCATGTCACTTCTACTACTACTACTACCAGGCTTCATTCCAGGAAAAAGTCACAACCACTGTATTGA
AA sequence Show only first row Show all	>Lus10038199 pacid=23158493 polypeptide=Lus10038199 locus=Lus10038199.g ID=Lus10038199.BGIv1.0 annot-version=v1.0 MTEEPPDAAAIMTLATFLYQKEELDDQLSVLLEGKEGGEEAAKTESVKLSKVKAEEQRGGLSNPSSDDKEVNFCSQRRSQSDVGMISARPWSSPSSLGSS RSMRKEKEWRRTLACKLFEERHDNNNNAADKSDEGMDLLWEAYEEEEETESSASDNKVIKPKTTKSKSRKSNRIAHNSYADDDDCGEEEVGGDDDHGGKS CCLQALKFSTGKMKLGMGKPNLLKISKAIKGIGWLHHHVTSTTTTTRLHSRKKSQPLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25130			unknown protein		Lus10038199 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	7.7	0.8667
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10024356 [exp]	8.5	0.8704
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	15.7	0.8837
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	16.4	0.8665
AT3G57450			unknown protein		Lus10018070 [exp]	31.7	0.8144
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	32.0	0.8401
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	34.9	0.8591
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	38.6	0.8507
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	40.0	0.8300
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	40.6	0.8363

Compare expression of checked genes

Lus10038199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.