Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 429 / 6e-146 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 428 / 2e-145 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G25180 404 / 6e-136 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31950 372 / 6e-124 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 338 / 3e-110 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37320 307 / 1e-98 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37340 305 / 5e-98 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT5G07990 303 / 4e-97 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37330 301 / 1e-96 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37310 299 / 2e-95 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025902 [exp] 1010 / 0 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 567 / 0 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 517 / 0 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 516 / 2e-179 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 515 / 2e-179 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025904 [exp] 498 / 2e-172 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 484 / 4e-167 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 478 / 7e-165 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038178 [exp] 468 / 4e-161 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 588 / 0 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 474 / 2e-163 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 463 / 3e-159 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 462 / 4e-159 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.004G106600 [exp] 454 / 9e-156 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.009G108600 [exp] 449 / 5e-154 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 416 / 8e-141 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 409 / 6e-138 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 407 / 3e-137 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 404 / 4e-136 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038200 pacid=23158416 polypeptide=Lus10038200 locus=Lus10038200.g ID=Lus10038200.BGIv1.0 annot-version=v1.0 ATGGATCTAATTTCCCACCTCCCGGAAATCCTGGTGGCTGTAGCCGTCGCCGTATTCATCCATCTATGGCGGCTAGGACGAACCAAATATCAAAAGCAAC AAAAATCCACCAACCTCATTAATCCTCCGGTGCCCAAAATCCCAGGCGCGCTTCCCTTAATCGGCCACCTCCACCTCCTCGGCGGCAACCAGACCCTCTC CCGCAAACTAGCCTCCTTCTCCGAAAAATACGGCGCAGTTTTCACCATCCGCCTCGGAGCCAACGACGCAGTAGTGGTCAGCGACTACGAAGGCATGAAA GAGTGCTTCACAACCAACGACCGGATCCTCTCCTTCCGACCCGACTCCAGCCAGGCCAAGATCCTCGGCTACAACTATGCTGCCTTTGGATTCGCTTCCT ACGGCAACTACTGGCGCGACATCAAGAAGTTGCTCATGAACCAGCTCCTCTCCGTCCAGCGTATCAAAGCCCTCCGTAACGTTCAGATCTCCGAGGTCGA ATCGCTCATGAAAAGCCTCTACCAAAGCAGCAAGCTCGGGAGGCCGATTAACATGAGCTCTTCTCTCCAGCACTACGTACTTAACATCATTACTCGGATG GTCGCTGGAAAGAGGTACTTCAACGACAAGAACGAGGAGGATGTTTCGGGGGGTAGGCCGATCGGTCAGGTTATGAAGGAGTTCATGCTGGTCACCGGTA CCCTTGTTCCTTCCGATTTGATTCCGGTTCTTGGTTGGTTCGGTTTTAAAGGAGTCGTAAATGCCATGAAGCGAGTGTCCAAGGAGCTTGACGTGATCAT GGAGAGCTGGATCGACGACCACAAGAAGAAAGAGATCGCCACTGGTGGCAAAATTAGCTCCGATTCGGATTTGATTGATGTTATGCTCCATGAAATTAAA GAGGACGTCGCTTACGGCCACAAACGCGAGACCATCGTTAAGGCCACAGCCATGTCTTTGATAGTGGCGGGGTCCGATACGACGTCGATTACGCTATCGT GGATCCTATCCAACTTAGTAAACCACAAGAGGGTGCTTAAGTTGGCGCAAGAAGAGATCGACGATAAGGTAGGAAGAGATCGGTGGGTGGACGATTCGGA CATCGAGAACTTGGCATACTTGGGAGCGGTGATCAAGGAGACATTGAGGATGTACCCTCCCGGGCCACTTTCGGTGCCCCGAGAAGCGTCGGAGGACATC ACGATCAAAGGGTACCACGTTCCGAAAGGAACTCGATTCTTTGCGAATTTCTGGAAGCTGCACAGGGACCCCAAAGTGTGGTCTGACCCGGACGAGTACA AGCCGGAGAGGTTCCTGACCGACAACGCGAATTTGGAGATATTCGGGCAGCAGTTCGAGTATCTCCCGTTCGGGTCGGGTAGGAGGGGTTGCCCCGGGAT CAATTTCGGGATGCAGGTGACGAAATTGACGTTGGCGAGGCTGCTGCAAGGGTTCGATTGGGGTACAGAAGGGGAGAAGCCGGTGGACATGACGGAAGGG ATGGGAATTGCGCTTCCAAAGGCTAACCCGCTGGAGGTTGTGCTCACCCCACGCCTTGCTCCTCAGCTTTACTAG
AA sequence Show only first row Show all	>Lus10038200 pacid=23158416 polypeptide=Lus10038200 locus=Lus10038200.g ID=Lus10038200.BGIv1.0 annot-version=v1.0 MDLISHLPEILVAVAVAVFIHLWRLGRTKYQKQQKSTNLINPPVPKIPGALPLIGHLHLLGGNQTLSRKLASFSEKYGAVFTIRLGANDAVVVSDYEGMK ECFTTNDRILSFRPDSSQAKILGYNYAAFGFASYGNYWRDIKKLLMNQLLSVQRIKALRNVQISEVESLMKSLYQSSKLGRPINMSSSLQHYVLNIITRM VAGKRYFNDKNEEDVSGGRPIGQVMKEFMLVTGTLVPSDLIPVLGWFGFKGVVNAMKRVSKELDVIMESWIDDHKKKEIATGGKISSDSDLIDVMLHEIK EDVAYGHKRETIVKATAMSLIVAGSDTTSITLSWILSNLVNHKRVLKLAQEEIDDKVGRDRWVDDSDIENLAYLGAVIKETLRMYPPGPLSVPREASEDI TIKGYHVPKGTRFFANFWKLHRDPKVWSDPDEYKPERFLTDNANLEIFGQQFEYLPFGSGRRGCPGINFGMQVTKLTLARLLQGFDWGTEGEKPVDMTEG MGIALPKANPLEVVLTPRLAPQLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	1.0	0.9951
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	1.4	0.9887
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	3.5	0.9872
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10017012 [exp]	3.7	0.9803
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	4.9	0.9809
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	5.0	0.9850
AT1G14550			Peroxidase superfamily protein...		Lus10024208 [exp]	5.2	0.9814
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	6.0	0.9866
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	9.8	0.9696
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	10.1	0.9783

Compare expression of checked genes

Lus10038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.