Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31950 176 / 9e-53 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT4G31940 176 / 2e-52 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 175 / 5e-52 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G25180 164 / 7e-48 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G37340 156 / 5e-45 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 152 / 9e-44 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37370 150 / 4e-43 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT1G66540 146 / 9e-43 Cytochrome P450 superfamily protein (.1.2) AT2G25160 149 / 2e-42 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G28740 145 / 7e-41 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025901 [exp] 402 / 7e-140 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025904 [exp] 279 / 1e-91 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 275 / 2e-90 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038178 [exp] 257 / 2e-83 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 215 / 3e-67 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 215 / 3e-67 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 212 / 2e-66 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 211 / 1e-65 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 192 / 2e-58 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 244 / 9e-79 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.004G147600 [exp] 191 / 7e-61 AT4G31940 351 / 3e-119 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 195 / 8e-60 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037500 [exp] 193 / 5e-59 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 184 / 8e-56 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 184 / 2e-55 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 182 / 5e-55 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037800 [exp] 182 / 8e-55 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 181 / 2e-54 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G038000 [exp] 181 / 3e-54 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038202 pacid=23158139 polypeptide=Lus10038202 locus=Lus10038202.g ID=Lus10038202.BGIv1.0 annot-version=v1.0 ATGCGTCTCTGCGGTGAATTTGTACCTGGGGGTATGATTACGTCTTTGGGATGGTTGAATTGGCTGTCTGGACCTGTCCAATCGATGAAACGCATTGCTG GGAAACTGGATGAGGTGATGCAGAGCTGGATTGAAGAGCATAAACTCAAAAGGACCAATATTGAAACAGCACTCTTCAAAGGTGAAAAACAGAGTGACTT CATAGATGTTACGCTGTCCGAAATCGACCCGGATTTCTGTGATGAGTATTCCCCTGAAACAGTCATCAAGGCAACCGCAATGACTCTGATCCTGGCCGGT GCTGAGACGACATTCGCGACAATGACATGGATGCTTTCCAATCTGCTGAATAACAGAAGTTCAATGGAGTTAGCGCAACAAGAGCTAGCCACCAAGGTCG GAAGAACTCGAACAGTAGAGCCCTCCGACATAGAAAATCTCGTCTACATCCAAGCCATCGTCAAAGAAACCCTCCTCCTCTACCCTGCCGCGCCAGTGGG TGTCCCCCACGAAGCGATCGAGGATTGCACCATCAACGGATACAACATACCTAAGAATACACGCATCTTTACAAATCTATGGAAGTTGCACAGGGATCCT AATGTGTGGCCAGATCCTAAAGATGAATAA
AA sequence Show only first row Show all	>Lus10038202 pacid=23158139 polypeptide=Lus10038202 locus=Lus10038202.g ID=Lus10038202.BGIv1.0 annot-version=v1.0 MRLCGEFVPGGMITSLGWLNWLSGPVQSMKRIAGKLDEVMQSWIEEHKLKRTNIETALFKGEKQSDFIDVTLSEIDPDFCDEYSPETVIKATAMTLILAG AETTFATMTWMLSNLLNNRSSMELAQQELATKVGRTRTVEPSDIENLVYIQAIVKETLLLYPAAPVGVPHEAIEDCTINGYNIPKNTRIFTNLWKLHRDP NVWPDPKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	0	1
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	1.0	0.9528
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10038201 [exp]	3.7	0.8477
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	6.2	0.8714
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	6.5	0.8574
AT2G46735			unknown protein		Lus10030208 [exp]	7.1	0.8668
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	9.2	0.8605
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	11.3	0.8455
AT2G46735			unknown protein		Lus10002690 [exp]	15.9	0.8632
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	17.1	0.8135
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025152 [exp]	17.2	0.7899

Compare expression of checked genes

Lus10038202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.