Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25180 461 / 4e-158 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31970 421 / 2e-142 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31940 408 / 2e-137 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31950 377 / 2e-125 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 352 / 1e-115 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 295 / 2e-93 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37370 279 / 8e-88 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37320 271 / 2e-84 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37400 270 / 2e-84 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37340 265 / 4e-82 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007837 [exp] 430 / 5e-146 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 417 / 4e-141 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 407 / 3e-137 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 407 / 4e-137 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 399 / 1e-133 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 399 / 2e-129 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 385 / 4e-128 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 379 / 5e-126 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 372 / 3e-123 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125300 [exp] 582 / 0 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.004G106600 [exp] 579 / 0 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037500 [exp] 459 / 2e-157 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 454 / 3e-155 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 431 / 8e-147 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 427 / 1e-144 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 425 / 6e-144 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 425 / 9e-144 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.001G334700 [exp] 422 / 4e-143 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037300 [exp] 409 / 5e-138 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038203 pacid=23158466 polypeptide=Lus10038203 locus=Lus10038203.g ID=Lus10038203.BGIv1.0 annot-version=v1.0 ATGGAGCATCAATCAAGCAACAGTTACTCCAATTACATCAAAGCCATTCTTGCTTCCTTACTACTACTCCCCTTGCTATTCATTCACCACGTTCCCAGAT TCATCACTCAAAGAACTCAACCTAAACACTTTGCGAAACCACGTCCTCGAGCCCCCGAGCCATCAGGTGCATGGCCATTGATCGGCCACCTGCATCTACT GATGAGCCCAAGACACAATAAAATCCCAGGCTGTAAAATCCTGGGAGCCTTGGCAGATAAATACGGCGCCATTTACTCTGTCCGGGTTGGCATCCGCAAC CTGCTGGTGTTGAGCGGCAGGGAAGTAGTTAAGGAATGCCTGACCACCAACGACCGGACCCTGGCCACTCGAGCCAGCATAGCGGTTGGCAAGCACGTGG GATACGACAACGCCATCTTGGGACTAGCACCATACGGCCCTTACTGGCGACACATCAGGAAAATGGCTACCGTCCAGCTTCTGTCCAACCACCGCATCGA ATCTATGACAAACATACGCCTCTCTGAAGTCAACCAATTCCTGAAGGAAGTGCACGCCGAAGTCAACCAATTCAACATGAGCCAGTTGTTGGAGGAGTTG GCGTTCAACATGGCCCTGAAGATGGTGGTGGGGAAGAGATTCGGGAGGGGAGATTACGCTGAGGGGAAGAGCGAGGTGCGGAGGTATAAGGAGGCTGTGG AAGAAGCTGAGCGGCTGAGCGGGGTGTTTGTGGCGTCGGATGCTGTGCCATGGTTGGAGTGGTTTGATTTGGGCGGACATGTAGGGGATATGAAGAGGAC GTTTAAGGTGATCGATGAAGTGGTCGGAAACTGGCTGGAGGAACGTGTGGCGGCTCGACAGGATAGAGGAGGAACACAACAGGATTTCCTGGATGTCATG ATCTCTAGCCTTGGGAATGATTCGGATGTTGCTTCTTTCTCTGCCCATTCCAGAGACACAATTATCAAGGCCACCACTCTGATTCTGACGCTCACGGGAT CAGGGAGTACTTCGATCACCGTAATATGGGCTCTGTCTCTACTTTTGAACCATCCAAGCATCTTCAAGAGAGCTCAGGAGGAGCTTGACCGACAAGTGGG TAAAGGAAGATGGGTTGAGGAATCCGACATCCAAAATCTGAAGTACCTCCAAGCAATTGTGAAAGAAACGTTGCGATTATACCCGCCGGGTCCGATCACA GGGATTCGAGAGGCCATGGAGGACTGCTGCATTGCCGGCTACAATATCACCAAGGGGACTCGTGTGGTGATCAACATCTGGAAGCTGCATCGAGATCCAA GGGTGTGGGAGAATGCTACTGCTTTTCAGCCAGAGCGATTCCTCAACAGACAAGCTGATGTGGATGTCATGGGCCAGAATTTCGAGTACATTCCGTTCAG TTCCGGTAGGAGGTCGTGCCCGGCTGTGAACTTGGGGATGAAAGTTGTTCAGTTGGTACTAGCCAGAGTGATTCAGGGCTTCGATTTGGTGACCCCCGGT GGGGTGCCTGTGGACATGGCTGAAGCAGAGGGGATTGCGCTGGCCAAGGTGAAACCTTTGGAAGTTGTGGCTACACCACGTCTGCATTCGGAGCTCTATT CCAATCTCTGA
AA sequence Show only first row Show all	>Lus10038203 pacid=23158466 polypeptide=Lus10038203 locus=Lus10038203.g ID=Lus10038203.BGIv1.0 annot-version=v1.0 MEHQSSNSYSNYIKAILASLLLLPLLFIHHVPRFITQRTQPKHFAKPRPRAPEPSGAWPLIGHLHLLMSPRHNKIPGCKILGALADKYGAIYSVRVGIRN LLVLSGREVVKECLTTNDRTLATRASIAVGKHVGYDNAILGLAPYGPYWRHIRKMATVQLLSNHRIESMTNIRLSEVNQFLKEVHAEVNQFNMSQLLEEL AFNMALKMVVGKRFGRGDYAEGKSEVRRYKEAVEEAERLSGVFVASDAVPWLEWFDLGGHVGDMKRTFKVIDEVVGNWLEERVAARQDRGGTQQDFLDVM ISSLGNDSDVASFSAHSRDTIIKATTLILTLTGSGSTSITVIWALSLLLNHPSIFKRAQEELDRQVGKGRWVEESDIQNLKYLQAIVKETLRLYPPGPIT GIREAMEDCCIAGYNITKGTRVVINIWKLHRDPRVWENATAFQPERFLNRQADVDVMGQNFEYIPFSSGRRSCPAVNLGMKVVQLVLARVIQGFDLVTPG GVPVDMAEAEGIALAKVKPLEVVATPRLHSELYSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	0	1
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	1.4	0.9170
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	2.8	0.8508
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	3.2	0.9050
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	3.9	0.8954
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	5.3	0.8713
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	6.2	0.7821
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	6.3	0.8454
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	7.7	0.8631
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10019671 [exp]	8.9	0.8246
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	8.9	0.7776

Compare expression of checked genes

Lus10038203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.