Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13030 102 / 2e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025900 [exp] 258 / 3e-82 AT4G13030 277 / 4e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247400 [exp] 165 / 3e-48 AT4G13030 292 / 8e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G199700 [exp] 56 / 2e-09 AT4G13030 125 / 9e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G124300 [exp] 56 / 3e-09 AT4G13030 112 / 4e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G246900 [exp] 46 / 2e-06 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038204 pacid=23158339 polypeptide=Lus10038204 locus=Lus10038204.g ID=Lus10038204.BGIv1.0 annot-version=v1.0 ATGAATAAACGCAGGGCTTACGCTGAAATATTGGCAAGTTATGATCAATTGAATGTGAGAAGTGAGGCCCTTCAAGATGCCAAGATCAAAATTTCGAGCT ACACTCGTGGAAAATGGATTGAGAATGCTAGAGCAAGGAAATATTGCACCGATTATGTTCCCGAGACTACAACATTGTTACTTGTTGGTTCAAAAGGATC TGGGAAAAGCAGTCTAATCAATCGGATTTCAAGGGTGTTTGGGAAGGATAAATTGGTGTCTGAAAGAGCGCAAGTATCATGTAATTCTTCTGTTGCTGAT GGGACCTACTTCCTTCAGGAGTATATGATCCCTAGAAATTCAAGTTCATTCTGCGTTTATGATACCCGTGGCTTGTCTGATGATTCATCGGATAACATTG AGATGCTCAAGCATTGGATGACTAAAGGTGTTCAGAAGGGGGAACTGATAATCAGGGAGGAGGCGGATGTGGACGAGATATTAGGAGCGGACGCTGAAGT CTATGATGATGATGATGATGATCCGGTTTTCGTATTGACAGATGAGTGGAAGGAGTTCTTCGCTGCATCTGAAGCCAGGAGGCGACTAGGTCTTTAA
AA sequence Show only first row Show all	>Lus10038204 pacid=23158339 polypeptide=Lus10038204 locus=Lus10038204.g ID=Lus10038204.BGIv1.0 annot-version=v1.0 MNKRRAYAEILASYDQLNVRSEALQDAKIKISSYTRGKWIENARARKYCTDYVPETTTLLLVGSKGSGKSSLINRISRVFGKDKLVSERAQVSCNSSVAD GTYFLQEYMIPRNSSSFCVYDTRGLSDDSSDNIEMLKHWMTKGVQKGELIIREEADVDEILGADAEVYDDDDDDPVFVLTDEWKEFFAASEARRRLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13030			P-loop containing nucleoside t...		Lus10038204 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	4.5	0.8861
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	7.5	0.8563
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	10.8	0.8573
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	12.7	0.8531
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	15.2	0.8552
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	16.0	0.8369
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	16.7	0.8372
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	18.2	0.8446
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	19.0	0.8310
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	20.0	0.8490

Compare expression of checked genes

Lus10038204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.