Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 393 / 2e-137 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 89 / 7e-20 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 68 / 2e-12 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 66 / 2e-11 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT4G21580 54 / 6e-08 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT3G56460 43 / 0.0002 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G65560 42 / 0.0003 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025899 [exp] 561 / 0 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 488 / 3e-174 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 485 / 1e-173 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 357 / 3e-123 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 351 / 6e-121 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 342 / 5e-116 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 210 / 3e-67 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 99 / 6e-23 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 95 / 9e-22 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342800 [exp] 415 / 3e-146 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 409 / 8e-144 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 406 / 1e-142 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 402 / 4e-141 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 320 / 9e-110 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 91 / 3e-20 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 76 / 2e-15 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 67 / 2e-12 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.009G103000 [exp] 61 / 5e-10 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.004G036100 [exp] 56 / 8e-09 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10038205 pacid=23158205 polypeptide=Lus10038205 locus=Lus10038205.g ID=Lus10038205.BGIv1.0 annot-version=v1.0 ATGTCATCAGATGCGGCAAAGAAGCTCATGCACGCCCTTCAGTACGCTAGCTGCGGCGGCGGAGCTGCTGCTTTAAAGCATGCTGAAGTTCCGATCCCTA CTCCGGCGAAGGATGAGGTGTTGGTTAAGTTGGAAGCAGTTTCTATCAATCCAATCAACTGGAAAGTTCAGAGTGGCATGATGCGCCCCTTCTTCCCCCG CATATTCCCTCGCATACCCTGTGCTGATGTAGCTGGTGAGGTGGTGGAGGTTGGTTCAGCAGTAGAGAAGTTCAAAGCTGGTGACAAAGTTGTGGCTTAT CTTGGTCTATCTATTGAGGGCGGAATGGCTGAGTATGCGACTGCCAAGGAAATCTCAACAGTTGCTAGGCCCGCTGAAGTTTCAGCAGCCGAGGGGGCAT CTTTGCCCGTTGCTGGTGTGACGGCTTACCAGGCCCTCACAAAGGTTGCCGGACTTAACCTCGATGGATCCGGCATCCAGAAAAACATTCTCGTAACTGC AGCTTCTGGTGGTGTTGGTCAGTATGCAGTTCAAATGGCAAAGCTAGGGAACGCACATGTGACGGCCACATGTGGGGCGAGGAACATCGAACTGGTGAAG AGCTTAGGCGCTGATGAGGTTCTTGATTACAAAACACCAGAGGGAGCAGCTCTTACGAGCCCTTCTGGCAAGAAGTATGATGCTGTGGTTCACTGCACTA CTGGTGTTTCATGGTCGACATTTGAGCCGAACTTGAGCGAGAGTGGCAAGGTTATAGATCTCACACCTGCACCGTCTGCCTTCCTGACGTTTGTCCTGAA GAAGCTGACCTTCTCCAAGAAGCAGCTGGTGCCACTGTTGGGTGATATTAAGAGTGATGACTTGGAGTATCTTGTTAAGCTTGTGAAGGAAAAGAAGCTC AAGACGGTTATCGACTCGACGTATACACTGGCCAAGGCTGAAGATGCTTGGGCGAAGAGCATTGAAGGGCATGCCACTGGGAAGATCATTGTGGAGCCTT AG
AA sequence Show only first row Show all	>Lus10038205 pacid=23158205 polypeptide=Lus10038205 locus=Lus10038205.g ID=Lus10038205.BGIv1.0 annot-version=v1.0 MSSDAAKKLMHALQYASCGGGAAALKHAEVPIPTPAKDEVLVKLEAVSINPINWKVQSGMMRPFFPRIFPRIPCADVAGEVVEVGSAVEKFKAGDKVVAY LGLSIEGGMAEYATAKEISTVARPAEVSAAEGASLPVAGVTAYQALTKVAGLNLDGSGIQKNILVTAASGGVGQYAVQMAKLGNAHVTATCGARNIELVK SLGADEVLDYKTPEGAALTSPSGKKYDAVVHCTTGVSWSTFEPNLSESGKVIDLTPAPSAFLTFVLKKLTFSKKQLVPLLGDIKSDDLEYLVKLVKEKKL KTVIDSTYTLAKAEDAWAKSIEGHATGKIIVEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038205 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	3.7	0.9349
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	8.8	0.9189
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	9.3	0.9279
					Lus10000100 [exp]	10.7	0.9301
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	13.4	0.9210
AT3G56570			SET domain-containing protein ...		Lus10013825 [exp]	13.6	0.8543
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	14.7	0.9174
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	17.5	0.9252
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	17.9	0.9135
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	24.8	0.8951

Compare expression of checked genes

Lus10038205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.