Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 137 / 3e-37 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 102 / 2e-24 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 88 / 1e-19 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT5G61510 82 / 2e-17 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 83 / 3e-17 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G63620 61 / 3e-10 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT3G56460 59 / 1e-09 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G45770 55 / 3e-08 Polyketide synthase, enoylreductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025898 [exp] 657 / 0 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 518 / 0 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 426 / 1e-149 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 423 / 4e-149 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 410 / 4e-144 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038205 [exp] 408 / 2e-143 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 327 / 4e-113 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 141 / 1e-38 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 139 / 1e-37 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342900 [exp] 479 / 2e-171 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 478 / 5e-171 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 451 / 2e-160 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 447 / 4e-159 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 361 / 5e-126 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 132 / 2e-35 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 110 / 1e-27 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 108 / 1e-26 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 86 / 8e-19 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.004G233800 [exp] 79 / 2e-16 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10038206 pacid=23158488 polypeptide=Lus10038206 locus=Lus10038206.g ID=Lus10038206.BGIv1.0 annot-version=v1.0 ATGTCGGAGAAGCTAATGCGCGCCCTCCGTTACGATCGCTACGGCGGAGGAGCCTCTGCTTTGAAGCATGTTGAAATTGCAATGCCTGTGCCGAAGAAAG GTGAGGTTTTGGTGAAGGTGGAAGCCATCAGTCTGAATCCAGTGGACTGGAAAATGCAGAAAGGTGAGCTCAGGCCTATCCTCCCTTTCAGATTCCCCCA TATCCCAGGTACCGACATTTCAGGAGAGGTTGTGGAGATTGGCCCAGGAGTCAAACAATTCAGCCCTGGCGATGCAGTCGTCGGTATGGTCAACCATTTT ATGGGAGGAGGGCTAGCGGAGTACGCAATATTGAAGGAGTGGATAACCGTTAAAAGGCCAGCACAAGTTTCAGCAGCTGAAGCTTCAGGATTACTCGTTG CTGGCCTGACAGCTCATCAAGCTCTCACCCAAGCAGCCGGAATCAAACTTGACGCAAGTGGTGAGAGGAAAAACATCCTCATCACTGCAGGATCAGGCGG CGTGGGTCATTACGCCGTTCAGCTAGCAAAGCTCGGCAATGTCCATGTAACCGCTACTTGTGGTGCCCGGAACATGGAACTCGTCAAGAGTCTGGGAGCC GATGAAGTGATCGATTACAAGACTCCTTCTGGAGCATCTCTTCAAAGCGGCCCATCATCTGCCCGTAAGTATGATGCAATCATCCATTGCGCGACCGGGG TTCCCTGGTCGACGTTCGAGCCAAATCTGACCGAAAAGGGGAAGGTGGTTGATATTACTCCTAGTGCTGGTGCAATCCTAAATTCTGCCGTGAAGCTGCT TACCTGCTCGAAGAAGAAGCTGGTGCCACTGCTCATGATCCCAAAGGCTCAGAACCTTGAGTATTTACTGAATTTGGTGAAGGAAGGGAAGATGAAGACG GTGATCAACTCGAGCTATCCATTGAACAGAGCAGAAGATGCTTGGGCAGAGATTATGGATGGTCATGCTACAGGGAAGATTATAGTGGAACCCTTTGTGT AG
AA sequence Show only first row Show all	>Lus10038206 pacid=23158488 polypeptide=Lus10038206 locus=Lus10038206.g ID=Lus10038206.BGIv1.0 annot-version=v1.0 MSEKLMRALRYDRYGGGASALKHVEIAMPVPKKGEVLVKVEAISLNPVDWKMQKGELRPILPFRFPHIPGTDISGEVVEIGPGVKQFSPGDAVVGMVNHF MGGGLAEYAILKEWITVKRPAQVSAAEASGLLVAGLTAHQALTQAAGIKLDASGERKNILITAGSGGVGHYAVQLAKLGNVHVTATCGARNMELVKSLGA DEVIDYKTPSGASLQSGPSSARKYDAIIHCATGVPWSTFEPNLTEKGKVVDITPSAGAILNSAVKLLTCSKKKLVPLLMIPKAQNLEYLLNLVKEGKMKT VINSSYPLNRAEDAWAEIMDGHATGKIIVEPFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038206 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	4.7	0.9181
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	18.4	0.8996
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	21.0	0.8948
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	23.8	0.8995
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	24.5	0.8489
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10014670 [exp]	25.7	0.8208
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	30.0	0.8974
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	31.2	0.8951
AT2G47010			unknown protein		Lus10007453 [exp]	31.8	0.8954
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	40.5	0.8937

Compare expression of checked genes

Lus10038206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.