Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025897 [exp] 236 / 4e-81 ND / Lus10003161 [exp] 158 / 2e-50 ND / Lus10002344 [exp] 112 / 2e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247600 [exp] 120 / 2e-35 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038207 pacid=23158272 polypeptide=Lus10038207 locus=Lus10038207.g ID=Lus10038207.BGIv1.0 annot-version=v1.0 ATGATCGTATTGCTGGTGAAGCTAATCTGCTTGGCAATAAGCACAGCATCCAACCTCATCTCCCGCCTAATATTCAACACAACAGCTTACTTCCTAATCC TGATCATCCAAGGACTCCGAGTTCCCGGCCAGGCGGTGCAGACCGGGCTGGAACAAATCGGGGAGGCTCTGAAATCCGTCATCGACTACATCTTCCAGCT CATCTTGGAGGCCGTGAGTTCCGCTGTGTCGGCCGCATTAGAGGCTGTGTTCGAAGCGGTTGTCGGGTCGTTCACCTCAACCGGGTCGGCCGTTGGAGGG ATGATAGAGAACACGAGGAATTCGGTGGAAGGGTTGTTGAAGGACTTGCCGGAGCTTGGTCAGGAGTTGTCGGATTTGATTACCAAGATGCTGTCGGATG CCTTCGAGAATTACCTGGGGGCTCTTGGATATGTCGCCGAAAATGTCTGA
AA sequence Show only first row Show all	>Lus10038207 pacid=23158272 polypeptide=Lus10038207 locus=Lus10038207.g ID=Lus10038207.BGIv1.0 annot-version=v1.0 MIVLLVKLICLAISTASNLISRLIFNTTAYFLILIIQGLRVPGQAVQTGLEQIGEALKSVIDYIFQLILEAVSSAVSAALEAVFEAVVGSFTSTGSAVGG MIENTRNSVEGLLKDLPELGQELSDLITKMLSDAFENYLGALGYVAENV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038207 [exp]	0	1
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	1.4	0.8698
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	10.4	0.8248
AT5G02090			unknown protein		Lus10024357 [exp]	11.0	0.8325
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	11.4	0.8345
AT3G48660			Protein of unknown function (D...		Lus10015769 [exp]	12.0	0.8025
AT3G47160			RING/U-box superfamily protein...		Lus10011390 [exp]	13.5	0.8214
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	13.6	0.8407
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	14.7	0.8149
AT3G20340			unknown protein		Lus10021518 [exp]	16.7	0.7922
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	19.2	0.8253

Compare expression of checked genes

Lus10038207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.