Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07310 390 / 1e-134 Protein of unknown function (DUF760) (.1) AT5G48590 342 / 3e-116 Protein of unknown function (DUF760) (.1) AT1G48450 190 / 4e-56 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G17800 181 / 1e-52 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G32160 176 / 6e-51 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025896 [exp] 726 / 0 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 387 / 3e-133 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 382 / 2e-131 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 372 / 2e-127 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10035392 [exp] 196 / 2e-58 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10017989 [exp] 191 / 3e-56 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10041984 [exp] 186 / 2e-54 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10030993 [exp] 184 / 5e-54 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 162 / 1e-47 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247700 [exp] 468 / 1e-164 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1) Potri.015G031200 [exp] 196 / 2e-58 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.003G097400 [exp] 190 / 3e-56 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.012G042400 [exp] 182 / 2e-53 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10038208 pacid=23158484 polypeptide=Lus10038208 locus=Lus10038208.g ID=Lus10038208.BGIv1.0 annot-version=v1.0 ATGGAATCGGCCCTTTCCAATCACACCACCCTCTCCTGCTGCCTCATTCCCTTCTCTTCGCTGACTACCCGTCTAACTGCTCGTCGGAGTCTCAGCTTCC GGCTTGATTCCGCCAGGGGAGCAAGTTCATTCCTTCTTGATAGGCGCTCTCCATCGGTTGTTGTGGCTCGAGCTGGTTCAAGCCAGTGTGAGCCTAGTAG CAGCAGCTATAGCGGAAGTTTGAACACGCCGCTGGAGCCTCTTTCTGCTGCTGGCAAGTTCCTGAGTGGAGTGTTTCAGAACCAGAGGTCCCTGTTTCAT ATCGCCGTAGCTGATGAACTGAAGGCTTTGGCGGATGAGAGGGGTACTGCTGCTTCACGCCTGTTAAACAGCTCCGGCTCCGATGAAGCTGTGCTTCACA GGAGGATCGCTGGACTTAAAGAGCAAGAGTGCCAAGTTGCAGTGGAAGATGTAATGTATATGTTGGTTCTGTATAGATTCTCAGAGATCAGGGTCCCGTT GGTTCCAAAGCTCTCTAAGTGCGTTTACAATGGAAGACTGGAGATATGGCCTGCTAAGGACTGGGAGCTAGAGTCTATCCACACCTTTGACGTTTTAGAG ATGATAAAGGAACATGTCTCTACTGTCATTGGCCTACGATCAGATTCTAGTGTCACTGATACTTGGGCGACGACAGAGATTCAGCAGGTACACCTTGGTC AGCTGTATGCTTCCTCCATCTTATATGGATACTTTCTGAAGTCTGCTTCAGTGAGGCATCAATTGGATCGATCTCTAGCTCTACTTCGACAGGATCTCCA TGTTGCTCAACGATCAAGCATTCAGCATTCGACAGGATCTTCGTGTCGCTCAACTATCAAGCCTTCAGTATTTGGTGACAGGAAGAAGTTACAATCTTTG TCGTCCGCTCATGGATCATCTAAACAGGAGGCTGCTGGTCAAAGTTTGAGGTCTTACGTGATGGGATTCGATGCTGAGTCGTTACAGAGATGTGCGAGGA TGAAGTCCAAGGAGGCTTTGAATTTGATTGAGAAGCAGAGCTGTGCACTTTTCGGGGATGAGACGACAGGTGTGGTGGCCAGCAACGAGACTATTGTGAC GTCATTTGCGAGCCTGAGGAGATTGGTGTTGGAAGCAGCAGCTTTTGGTACATTCCTATGGGACACGGAAGAGTATGTCAACTCTGTATATACGCTCAAG GAAAACAACTGA
AA sequence Show only first row Show all	>Lus10038208 pacid=23158484 polypeptide=Lus10038208 locus=Lus10038208.g ID=Lus10038208.BGIv1.0 annot-version=v1.0 MESALSNHTTLSCCLIPFSSLTTRLTARRSLSFRLDSARGASSFLLDRRSPSVVVARAGSSQCEPSSSSYSGSLNTPLEPLSAAGKFLSGVFQNQRSLFH IAVADELKALADERGTAASRLLNSSGSDEAVLHRRIAGLKEQECQVAVEDVMYMLVLYRFSEIRVPLVPKLSKCVYNGRLEIWPAKDWELESIHTFDVLE MIKEHVSTVIGLRSDSSVTDTWATTEIQQVHLGQLYASSILYGYFLKSASVRHQLDRSLALLRQDLHVAQRSSIQHSTGSSCRSTIKPSVFGDRKKLQSL SSAHGSSKQEAAGQSLRSYVMGFDAESLQRCARMKSKEALNLIEKQSCALFGDETTGVVASNETIVTSFASLRRLVLEAAAFGTFLWDTEEYVNSVYTLK ENN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	0	1
AT4G17250			unknown protein		Lus10000731 [exp]	1.4	0.8796
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	2.8	0.8871
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	2.8	0.8757
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10037046 [exp]	2.8	0.8511
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	5.2	0.8087
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	5.5	0.8795
					Lus10007992 [exp]	5.5	0.8741
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	5.9	0.8742
					Lus10032008 [exp]	7.0	0.8521
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	8.4	0.8479

Compare expression of checked genes

Lus10038208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.