Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025894 [exp] 126 / 2e-36 ND / Lus10003163 [exp] 54 / 2e-08 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10003167 [exp] 53 / 5e-08 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10002340 [exp] 47 / 1e-06 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10003166 [exp] 48 / 2e-06 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003168 [exp] 47 / 6e-06 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003164 [exp] 41 / 0.0005 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038209 pacid=23158400 polypeptide=Lus10038209 locus=Lus10038209.g ID=Lus10038209.BGIv1.0 annot-version=v1.0 ATGGAGTTTGATCAGCTTCTCCAACTGGTGGTCAAGCCTTTACTCAAGGCATTCATTCTATGTGTTCTCCTATGCCTCCCCGGTCCAACCGGTCAAATAT TGAGCTTCCTTGTAGCATTGTACCAGCTGCCGATCTTCGAGGAATACAAGGAGACCCTGGCTGATCATTTGGGTCGCTTTCTTCATGGTCTGTGGGATTC ATTCAGGGCATTTGTGGCTTCCATTGTTGCAAAGGCTGCCAGTTTGATGAACAAGATGTCAGCAATAATCTCCTCCATCAAAGGCTGGTTTAGCAAGCTC TTTCAGCGCGTCAAGGAAATGGTAACCCGAATTGAAGATTACATACTCCCAAAGTGCTACATCTATGCATATTGCAGCAGCAGTAAAGAGGCTGATAAAA TCAACGTTTGTCGTCATCTGCGCGGTACGTGGATGGGCTATGCCGCTCCCTTGGCTGGCACTGCTGCTGATATCTGTAACAAAGCAAGGATTGACAGTAG TAGATATGAATTTCCTTGGTTGTATAACCTCCATCTGAGCGGCGGCTTACATGGTTATGCACGATTCGAAATCAAGCAGATGTCAAGCATCTCCATTGTT ACATTCCTCAACAGGTTCGACATTCAGGGAACTTGTGCTCTTCAGGGGAAGATCTTTCAGCTAGGCATGAAGACGCAGGGGCTAAAGCTGCTAAAGCCTT GTCTGAGGTCAAATACGACGGTGGTGCCAACAAGCGCCTTCCTAGAGTGGTTAATTAGTTGA
AA sequence Show only first row Show all	>Lus10038209 pacid=23158400 polypeptide=Lus10038209 locus=Lus10038209.g ID=Lus10038209.BGIv1.0 annot-version=v1.0 MEFDQLLQLVVKPLLKAFILCVLLCLPGPTGQILSFLVALYQLPIFEEYKETLADHLGRFLHGLWDSFRAFVASIVAKAASLMNKMSAIISSIKGWFSKL FQRVKEMVTRIEDYILPKCYIYAYCSSSKEADKINVCRHLRGTWMGYAAPLAGTAADICNKARIDSSRYEFPWLYNLHLSGGLHGYARFEIKQMSSISIV TFLNRFDIQGTCALQGKIFQLGMKTQGLKLLKPCLRSNTTVVPTSAFLEWLIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038209 [exp]	0	1
					Lus10001854 [exp]	7.9	0.9982
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	8.4	0.9894
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	8.7	0.9855
AT2G48020			Major facilitator superfamily ...		Lus10027977 [exp]	9.5	0.9670
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025640 [exp]	9.8	0.9597
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	11.3	0.9974
AT3G54750			unknown protein		Lus10012287 [exp]	12.2	0.9178
					Lus10014949 [exp]	13.3	0.9670
					Lus10042706 [exp]	13.9	0.9974
					Lus10006079 [exp]	16.0	0.9974

Compare expression of checked genes

Lus10038209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.