Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71320 47 / 9e-06 F-box family protein (.1) AT5G07610 44 / 0.0001 F-box family protein (.1) AT1G11270 43 / 0.0002 F-box and associated interaction domains-containing protein (.1.2.3) AT1G32420 43 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT5G18160 43 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT1G47790 42 / 0.0007 F-box and associated interaction domains-containing protein (.1) AT4G12560 42 / 0.0007 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025893 [exp] 250 / 4e-82 AT1G11270 49 / 7e-07 F-box and associated interaction domains-containing protein (.1.2.3) Lus10040338 [exp] 168 / 2e-48 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10010910 [exp] 130 / 5e-34 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10040463 [exp] 110 / 1e-26 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 110 / 2e-26 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 110 / 2e-26 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 110 / 2e-26 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 92 / 2e-20 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10027028 [exp] 62 / 4e-11 AT4G12560 54 / 7e-09 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011400 [exp] 57 / 9e-09 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 54 / 6e-08 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G010800 [exp] 51 / 7e-07 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037312 [exp] 50 / 9e-07 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 50 / 9e-07 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 49 / 2e-06 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 49 / 3e-06 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 47 / 1e-05 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014700 [exp] 46 / 4e-05 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.010G154700 [exp] 45 / 6e-05 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10038210 pacid=23158461 polypeptide=Lus10038210 locus=Lus10038210.g ID=Lus10038210.BGIv1.0 annot-version=v1.0 ATGACTAATATTCTCCACCGACTCAGCGTCAATGATCAGGTGAGGTGCAGGAGGGTCTCAAAACGGTGGCTCTCCATACTCGACAGCCCGCAGTTCATCC GTAACCAACTCATCCGCTCCTCCATGTCCACCACAAACTCAAACGCCGCCCTCTTCCTTCAACCCCAATCGAAGAACGCCAATTTCCTCTGCTGGAAAGA AGAGTATCATGGCAGCAGAAATAAAGGAGGTTTCTCCTCCTCTGGTCCGATCCAGTACCATTACGAACCTGATCAAGTGCTGGTCATGGGTTCTTGCCAC GGCTTGATATGCTTTACTCGTGTTCACCATCCACATGATCTTGTTGTCCTGAATCCATGGACAGGTGAGCGTAAAGTGGTCAGGGACGATGAAGAATTTC AGAAGCTGGAAGCCTATGGTTTCCGCGTTTCTCTTCTGGATAAAGATGCAGGAGAAATTGGCATTTGGGTGATGAAGGAATACGGGAGGGTTGAATCCTG GACCAAAACTTACACCATTCGCCAGGACTCCGTTCCAGAGAGTATCAACATTTTGGGGAGCAATGGAGGTCGGATACTATTGATGTTGGACAGTTGCAGA TTTGTTTGGTGCAATCCGGGGAAGAATGTGGTGGAAGCTGTTGGGGTGGACACCGGGGATGAAACATATACAGCAATATATTGTGTTGAGATTTTGGTTG AGTTGTTCCCACCTCACCAGGAAGTCGATGGAAATGATGATCACGATAAGGAAGTGAAACATAATTTGCGGGATGTTGATGTTCCTTGGAGTTTGATTGA GGTGGCATCCTCACTGGCTGAAGTGCCTACAAGTAAAGAAGACAAGATGTCCACTGGACTCAGTTCTAAAGGGTCCTGCACCAACCCGCGGTCAGCAACC ATCCAGCGAGTCTCCGTTGACCGTCCGATGATTTTCCGTAACATGTTATACAAATTAATAACTGATTACAATGGTTGTGAAGAAAGGAGAAGATTGCAGC TTCCTTTTTCCAAAGGAGACGTGGCCTACTGCTGCACTGTGTCAAAGAATGAGTCATCAGCTCAATTTCAGCTTGATGACCCGGCTGCAGTCGCTCAACT CATACAAGATCTTGTGGCTTGA
AA sequence Show only first row Show all	>Lus10038210 pacid=23158461 polypeptide=Lus10038210 locus=Lus10038210.g ID=Lus10038210.BGIv1.0 annot-version=v1.0 MTNILHRLSVNDQVRCRRVSKRWLSILDSPQFIRNQLIRSSMSTTNSNAALFLQPQSKNANFLCWKEEYHGSRNKGGFSSSGPIQYHYEPDQVLVMGSCH GLICFTRVHHPHDLVVLNPWTGERKVVRDDEEFQKLEAYGFRVSLLDKDAGEIGIWVMKEYGRVESWTKTYTIRQDSVPESINILGSNGGRILLMLDSCR FVWCNPGKNVVEAVGVDTGDETYTAIYCVEILVELFPPHQEVDGNDDHDKEVKHNLRDVDVPWSLIEVASSLAEVPTSKEDKMSTGLSSKGSCTNPRSAT IQRVSVDRPMIFRNMLYKLITDYNGCEERRRLQLPFSKGDVAYCCTVSKNESSAQFQLDDPAAVAQLIQDLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	1.0	0.9843
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	4.7	0.9725
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	6.0	0.9475
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	6.5	0.9642
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	7.7	0.9600
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	9.6	0.9637
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	11.0	0.9425
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	11.5	0.9592
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	13.2	0.9291
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	14.3	0.9302

Compare expression of checked genes

Lus10038210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.