Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07320 596 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G23770 510 / 7e-179 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 486 / 2e-169 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 353 / 2e-117 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 344 / 5e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 338 / 3e-111 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 301 / 1e-96 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 299 / 8e-96 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 295 / 2e-94 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 294 / 2e-93 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025892 [exp] 778 / 0 AT3G07320 545 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10008881 [exp] 494 / 1e-172 AT3G23770 579 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023226 [exp] 487 / 4e-170 AT3G23770 572 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 357 / 8e-119 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 346 / 1e-114 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 345 / 3e-114 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 337 / 7e-111 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 328 / 3e-107 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 288 / 3e-92 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247900 [exp] 679 / 0 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 652 / 0 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G321900 [exp] 520 / 0 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G060300 [exp] 507 / 1e-177 AT3G23770 599 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 351 / 2e-116 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 341 / 1e-112 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 336 / 1e-110 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 323 / 1e-105 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 310 / 5e-100 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 303 / 4e-98 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10038211 pacid=23158353 polypeptide=Lus10038211 locus=Lus10038211.g ID=Lus10038211.BGIv1.0 annot-version=v1.0 ATGAAAAACCTCTTCTTTTTCTTAATCCTCGCTCTCTTCCTCTCTTTCTCCGGCGCCGAGATCTCCAGCAGAGTAGGTATCAACTACGGCCAGCTGGGCA ACAATCTCCCCTCCCCTGCGCGCTCCGTCCACCTCATCAAATCACTCAAAGCCAAACGGGTCAAAATCTACGATGCCAATCCTAAGATCCTCCGAGCCTT TAAAGGAACCGACCTTCAACTCTCCATCATGGTTCCTAACGAGCTCATCCCCAACGTCTCCGCTAGCCAGTCCTTCTCCGACCGATGGGTGCTCACCAAC GTCGTCCCTTTCTACCCGGCCACCAAGATCCGATATCTCTTAGTCGGCAACGAGATTCTCACCAATCCCGATATCGGGACCTGGTTCAATCTCGTCCCTG CTATGCGCCGAATCAAACTCTCCCTCCACAAATTCCGCCTCCACAAGATTAAAGTCAGCACACCTCACGCCACTAATGTGCTCGAATCGTCCTTCCCGCC GTCTAACGGAACGTTCCGTTCCGACGTCGCCGTTCCGATTATGAAGCCGATGCTGCAGTTCTTGAACAGGACCCGGTCCTTCTTCTTCCTCGATGTTTAC CCCTTTTTCCCATGGTCTGCGGACCCCAAAAAGAACAGATTGGATTACGCGCTTTTACAGCCCAGTAATTTCACCTACACCGATCCAGTCTCCAAGTTGA CTTATACCAACCTCTTTGATCAGATCGTCGACGCAACTATCTTCGCTATGAAGCGCCTCGGGTACCCGGATATCCGGATCTTCATCGCCGAAACGGGCTG GCCCAGCGCTGGAGACATCGACCAAATCGGGGCTAACATCCACAACGCCGCGGTATACAACCGCAACATCGTCAAGAAGCTGACTGCCAAGCCGGCGATC GGTACTCCGGCGAGGCCCGGGGTTGTAATCCCGTCGATTATCTTCGCGTTGTACAACGAGAACCAGAAGCCGGGACAGGGCACGGAGCGGCATTTCGGGC TGCTGTACCCGAACGGGACGGCGTTGTACGAGATCGACCTTAGCGGGGAGACGCCGCTTTCCGGGTACAAGAAGCCGCTGCCGCCGCCGACGAACAACGA GCCGTATACAGGGAAGCTGTGGTGCGTGGTGGGGGAGACGGCGACGAATACGACGGCAGTGGTGGAGGCGCTGTCTTGGGCTTGTTCGCAAGGGAAAGGG CTGTGCGACCCGATACAGCCAGGTGGGAAGTGCTTTAAGCCCGACTCGGTGAGTTGGCATGCGAGTTACGCGTTCAGTGCTTACTGGGCCGAGTTTAAAA AGGCCGGGGGCACTTGCTCTTTCAATGGGCTTGCTGCTCTAACGGTCAAGGATCCAAGTGTGGGAGAGTGCAAGGTTCCAAGTGGAAGGCTGCAACTGGT GGGAGGTAATAAGAATGATTGTGAAGGAGAAACAGACATTTTGCTGTCTGTTGGTGAAATGATCGATATTCTGGAAGCTGACTTCTGA
AA sequence Show only first row Show all	>Lus10038211 pacid=23158353 polypeptide=Lus10038211 locus=Lus10038211.g ID=Lus10038211.BGIv1.0 annot-version=v1.0 MKNLFFFLILALFLSFSGAEISSRVGINYGQLGNNLPSPARSVHLIKSLKAKRVKIYDANPKILRAFKGTDLQLSIMVPNELIPNVSASQSFSDRWVLTN VVPFYPATKIRYLLVGNEILTNPDIGTWFNLVPAMRRIKLSLHKFRLHKIKVSTPHATNVLESSFPPSNGTFRSDVAVPIMKPMLQFLNRTRSFFFLDVY PFFPWSADPKKNRLDYALLQPSNFTYTDPVSKLTYTNLFDQIVDATIFAMKRLGYPDIRIFIAETGWPSAGDIDQIGANIHNAAVYNRNIVKKLTAKPAI GTPARPGVVIPSIIFALYNENQKPGQGTERHFGLLYPNGTALYEIDLSGETPLSGYKKPLPPPTNNEPYTGKLWCVVGETATNTTAVVEALSWACSQGKG LCDPIQPGGKCFKPDSVSWHASYAFSAYWAEFKKAGGTCSFNGLAALTVKDPSVGECKVPSGRLQLVGGNKNDCEGETDILLSVGEMIDILEADF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	0	1
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	1.0	0.9107
					Lus10007510 [exp]	2.4	0.7916
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	4.9	0.7529
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	5.5	0.8140
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	7.1	0.7759
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	9.3	0.8407
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	10.6	0.7944
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10040950 [exp]	12.0	0.7749
					Lus10026969 [exp]	12.4	0.7655
					Lus10013266 [exp]	13.4	0.7569

Compare expression of checked genes

Lus10038211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.