Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 91 / 3e-21 S-locus lectin protein kinase family protein (.1) AT1G11330 82 / 4e-18 S-locus lectin protein kinase family protein (.1.2) AT1G65790 76 / 7e-16 ARK1 receptor kinase 1 (.1) AT1G61610 75 / 1e-15 S-locus lectin protein kinase family protein (.1) AT4G23150 75 / 1e-15 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT1G11350 74 / 4e-15 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G23260 73 / 4e-15 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT4G23250 73 / 5e-15 RKC1, CRK17, DUF26-21, EMB1290 RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY\(CLONTECH\).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1, EMBRYO DEFECTIVE 1290, CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 17, kinases;protein kinases (.1) AT4G21390 73 / 5e-15 B120 S-locus lectin protein kinase family protein (.1) AT1G11410 73 / 7e-15 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025891 [exp] 199 / 3e-59 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10031602 [exp] 166 / 4e-50 AT4G03230 338 / 7e-108 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 171 / 3e-49 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10033742 [exp] 167 / 3e-49 AT4G03230 161 / 2e-42 S-locus lectin protein kinase family protein (.1) Lus10033743 [exp] 168 / 4e-48 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 157 / 3e-44 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10015422 [exp] 143 / 2e-40 AT1G11330 324 / 5e-102 S-locus lectin protein kinase family protein (.1.2) Lus10039733 [exp] 145 / 3e-40 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 144 / 9e-40 AT4G21380 649 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125601 [exp] 93 / 1e-21 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 89 / 3e-20 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 88 / 3e-20 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 87 / 6e-20 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G027501 [exp] 87 / 6e-20 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 87 / 8e-20 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.013G150800 [exp] 86 / 2e-19 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 85 / 4e-19 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.011G035800 [exp] 85 / 5e-19 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125651 [exp] 85 / 6e-19 AT4G27290 838 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038212 pacid=23158268 polypeptide=Lus10038212 locus=Lus10038212.g ID=Lus10038212.BGIv1.0 annot-version=v1.0 ATGGCTTATTGGCTTGTAAGTAACACAGACCAAATGTCCCGTAACTGGGAGTATAATTTTTCTCACAATCTGAAGGCATTCACAAGTCAATCAGTCATTG TCGCAAGTCAACAAAAGGAAAGGTTTCGGTGTAAAGAGATGATTAGTCAGTTATTCAACAGTGAAACAGTATGCTTGCTAATGGCTGGTACTAGTAGAGG TGGGGATCCCTTTCTCAACTTCTTGGCCCTCCTCCCTGAGATCCTTATGATGAACAGCCATGAATTTCTGACATTAGAATCACTCCTAACCAATCCCTTC ACAGCAACCAAACCGGTATGGGAGCTTTGGAAAGAAGGAAAAGCCGAAGAGCTGATTGATCATGCAGTGAAGAACAGCACCTGCAGTAATCCAACTGAAG CAGTGAAGTTCATCCATGTGGGTCTTTTGTGCGTGCAAGATGCTCCAACTGACAGGCCAACAATGTCTTCAGTAACTCTGATGCTGTCGAGTAACGATTC TCAGTCGTTTCCGTCGCCTGGAGAACCGGCCTTCATCATCAGGAGAGCTGCTGCCGAGACTAATGATCAAGTTCCAGTTAACTGTTCAAACAACCAGATC ACAATGAGCTTGTCAACTGGTAGATAA
AA sequence Show only first row Show all	>Lus10038212 pacid=23158268 polypeptide=Lus10038212 locus=Lus10038212.g ID=Lus10038212.BGIv1.0 annot-version=v1.0 MAYWLVSNTDQMSRNWEYNFSHNLKAFTSQSVIVASQQKERFRCKEMISQLFNSETVCLLMAGTSRGGDPFLNFLALLPEILMMNSHEFLTLESLLTNPF TATKPVWELWKEGKAEELIDHAVKNSTCSNPTEAVKFIHVGLLCVQDAPTDRPTMSSVTLMLSSNDSQSFPSPGEPAFIIRRAAAETNDQVPVNCSNNQI TMSLSTGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10038212 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	4.7	0.7536
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	10.8	0.7522
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	12.8	0.7538
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	15.9	0.7512
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	16.8	0.7482
AT1G06320			unknown protein		Lus10038213 [exp]	17.6	0.7025
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	22.5	0.7482
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	27.9	0.7113
AT1G80940			unknown protein		Lus10041624 [exp]	30.1	0.7418
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	30.2	0.7255

Compare expression of checked genes

Lus10038212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.