Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06320 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202500 [exp] 39 / 0.0003 AT1G06320 74 / 5e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038213 pacid=23158158 polypeptide=Lus10038213 locus=Lus10038213.g ID=Lus10038213.BGIv1.0 annot-version=v1.0 ATGCAGAAAGTTCTGACGGAAGCATTGGGGGATCTGGATCTGATGGACCTCTCCCGCTCCACCACCATCCAGGAGCGCAGCACTGAGATATCCTCATCCG CATCAATCACTCTGGAAGAATTGGCCGATGACCTGAACGAGCTGGATTGGCAGGAATGCTGCATCACCTCCGTAGAAGCTCTCTACTCCCAAAAAGGAGG CAACGCTTCCACTGCGATTCACCAGGCCACCACCGATCTCTCCTTGACACAGCCAGCTGACACTTGTCCGCAATCCGATTCCCAATCTGTTTCTGCTCTC AAGAAGAGGAAAATAATTTCTGCCCAAACACTGTACTCCACCAAAGAAGACGCTGCCCCAACGAGCCTCGATGCTACCGAGCCAGTCAAACTCAAGAAAC AGCCTACTGCTGCATTCAAGAAGAGCAAAACAGCGTCTGTACAAAGTCGGTCCTCCAAAGACGACGATTCCCCCAATCGATCCGCTACTGAGACGACTAG TTAA
AA sequence Show only first row Show all	>Lus10038213 pacid=23158158 polypeptide=Lus10038213 locus=Lus10038213.g ID=Lus10038213.BGIv1.0 annot-version=v1.0 MQKVLTEALGDLDLMDLSRSTTIQERSTEISSSASITLEELADDLNELDWQECCITSVEALYSQKGGNASTAIHQATTDLSLTQPADTCPQSDSQSVSAL KKRKIISAQTLYSTKEDAAPTSLDATEPVKLKKQPTAAFKKSKTASVQSRSSKDDDSPNRSATETTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06320			unknown protein		Lus10038213 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	3.7	0.8108
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	5.3	0.7277
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	8.5	0.7695
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	12.4	0.7519
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	16.9	0.6990
AT4G03230			S-locus lectin protein kinase ...		Lus10038212 [exp]	17.6	0.7025
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018029 [exp]	21.2	0.6168
					Lus10040028 [exp]	21.3	0.6938
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	21.9	0.7063
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	27.3	0.7272

Compare expression of checked genes

Lus10038213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.