Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25210 102 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27800 50 / 8e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27300 50 / 1e-07 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT4G01400 44 / 1e-05 unknown protein AT1G30290 40 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025890 [exp] 187 / 3e-59 AT3G25210 430 / 6e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011029 [exp] 54 / 7e-09 AT2G27800 430 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002675 [exp] 44 / 2e-05 AT4G01400 570 / 0.0 unknown protein Lus10005303 [exp] 40 / 0.0004 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041542 [exp] 40 / 0.0005 AT5G14080 671 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248100 [exp] 122 / 5e-34 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G103400 [exp] 44 / 2e-05 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G103600 [exp] 43 / 3e-05 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G093700 [exp] 42 / 7e-05 AT2G27800 483 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G082300 [exp] 40 / 0.0003 AT1G30290 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038214 pacid=23158337 polypeptide=Lus10038214 locus=Lus10038214.g ID=Lus10038214.BGIv1.0 annot-version=v1.0 ATGTCTATCGCGTTACGGCGCTTCCTCGGGTCATCCTCCACCACCGGCCACAGGATTTCTTCGCTTCCACTTTTTCCTCTCCGTCGCCGTCTCCTCGTCT CTTCATCATCCGACGCCGATACCCAAATTCCTGACTCATCCCACGATTCAGACCTCGACATCCCTCCACTCCCTATAACTCGAACCCGAACCCCACTCGA AACCGGGTTCGAGTCCTGGATCCAGAAGCTAAAACCTGGGTTCACTCCGGCGGACGTAGAAGGCGCCATCCGAGCTCAGACGGACCCGGACCTCGCTCTC GACATCTTCCGTTGGACAGCTCAGCAGCGCAACTACAAGCACAATCATGTCACCTACCTCACCATGATCAAGACTCTCATCAATGGGCGGCGCTACCGCC ACGCCGCAACCCCGGTTGGCGGCGCTACCGCCACGACAAACATTTGGGTGAGAAATTAG
AA sequence Show only first row Show all	>Lus10038214 pacid=23158337 polypeptide=Lus10038214 locus=Lus10038214.g ID=Lus10038214.BGIv1.0 annot-version=v1.0 MSIALRRFLGSSSTTGHRISSLPLFPLRRRLLVSSSSDADTQIPDSSHDSDLDIPPLPITRTRTPLETGFESWIQKLKPGFTPADVEGAIRAQTDPDLAL DIFRWTAQQRNYKHNHVTYLTMIKTLINGRRYRHAATPVGGATATTNIWVRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038214 [exp]	0	1
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	12.4	0.6312
AT1G65000			unknown protein		Lus10026159 [exp]	54.0	0.5697
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	68.8	0.5617
AT1G01390			UDP-Glycosyltransferase superf...		Lus10005335 [exp]	72.6	0.5674
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	95.0	0.5727
AT2G15220			Plant basic secretory protein ...		Lus10001358 [exp]	106.2	0.5652
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	147.5	0.5460
AT1G12064			unknown protein		Lus10010487 [exp]	170.0	0.5370
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	195.3	0.5324
AT4G36750			Quinone reductase family prote...		Lus10024032 [exp]	217.0	0.5294

Compare expression of checked genes

Lus10038214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.