Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25210 369 / 1e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48580 202 / 1e-63 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 197 / 1e-61 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT2G27800 163 / 3e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25230 108 / 2e-25 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 107 / 6e-25 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G46100 104 / 4e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G45680 96 / 7e-23 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT3G04760 100 / 3e-22 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 95 / 1e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025890 [exp] 383 / 3e-131 AT3G25210 430 / 6e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025889 [exp] 238 / 1e-77 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 219 / 6e-70 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 217 / 2e-69 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10035800 [exp] 159 / 2e-47 AT5G48580 127 / 1e-38 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10011029 [exp] 148 / 3e-40 AT2G27800 430 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038216 [exp] 107 / 9e-25 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 107 / 1e-24 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 107 / 1e-24 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248100 [exp] 390 / 2e-133 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G248200 [exp] 215 / 1e-68 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.018G093700 [exp] 159 / 9e-44 AT2G27800 483 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G149400 [exp] 112 / 2e-26 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.011G057900 [exp] 109 / 9e-26 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G248300 [exp] 108 / 3e-25 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.006G015900 [exp] 105 / 4e-24 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019300 [exp] 100 / 1e-22 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G075900 [exp] 100 / 2e-22 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 100 / 2e-22 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038215 pacid=23158254 polypeptide=Lus10038215 locus=Lus10038215.g ID=Lus10038215.BGIv1.0 annot-version=v1.0 ATGACTGTCCCGCTCTACAATTCCGTCATTCGGTTCTGCTGCGGCCGTAAGTTTCTGTTCAACCGTGCGTTTGATGTGTACAACAAGATGCTGAGATCGG ATGACTGTAAGCCGACGCTAGAAACCTATGCTCTACTCTTCAATTCGCTGCTTAGGAGGTTTAACAAGTTGAATGTGTGCTATGTCTATTTGCACGCTGT TAAATCCATGACCAAGCAGATGAAGACCTCTGGGGTTATCCCGGATACCTTTGTGCTGAATATGATCATCAAAGCATACTCCAAGTGTCTTGAAGTCGAT GAAGCGGTTAGGGTGTTTAGGGAAATGGGGTTGTATGGATGTGAGCCCAATGGTTATAGCTACGGCTATCTTGTCAAAGGGTTGTTTGAGAAAGGGAGAC TCGGACAGGGTTTGGGATTTTACAAGGAGATGAAGAGTAAAGGGCTGGTTCCTGGAGGGAGTACTTACATGATTGTGATTTGTAGTCTTGCTATGGCACG GAAGCTCGATGATGCAGTGGGAGTTGTGTTTGATATGTTGAGGAACTCGCTGTCACCGGATCAGTTGACGTATAAGACTGTATTGGAAGGGATGTGCAGA GATGGAAGGGGAAGTGAGGCTTTAGACCTACTTGAGCAGTGGAGAAAGTTGGACGGATTGATGGGTGAGAAAGTGTACAAGGCTCTCAATGAGCATCAGA AATCGCATGCTACAGTATTGTGGCGCCAAGTTCGATTAAAAGGGCTTGAATTTGCAGTCCAGAATGTTGGTGGTAGTTCTGAGAGAGTCCCGGAAGCTGG GGGTCTTCAAAACCAATCAGTTACTGCACTCAACGACGATCCCCGGCGATTTTCGTCACAGGCAGCAGAAATTGAATGGAAGCTGGTGCCATCTCGGCTT ATACTGGCTAATGCTACCGAGTGGCCACCACGGAGGACAACTAGGATGAAGGTCAATCAATACTTTTATGGGGTAAATGGTGCTGTTAGAATGAAGATGC ACAAACCCGAATCATGTGAAATTCAGGCCCATAAGGGAGACAAGATCAAAGTACACTACAGGGGAAAACTCACTGATGGCACTGTTTTCGACTCCAGCTT TGAGAGAGGCGATCCCATAGATTTTGAGCTTGGCAGTGGGCAAGTTATCAAAGGATGGGACCAAGGACTGTTGGGGATGTGCGTAGGTGAGAAGCGGAAG TTGAAAATTCCTGCAAAACTTGGTTATGGTGACCAAGGCTCTCCCCCTACGATTCCAGGTGGAGCAACATTGATATTCGATACGGAGCTTGTTGCTGTAA ATGGGAAGACAAAGGGAGGAGAGACTGCAAAAGATAGTGAGCTCTAG
AA sequence Show only first row Show all	>Lus10038215 pacid=23158254 polypeptide=Lus10038215 locus=Lus10038215.g ID=Lus10038215.BGIv1.0 annot-version=v1.0 MTVPLYNSVIRFCCGRKFLFNRAFDVYNKMLRSDDCKPTLETYALLFNSLLRRFNKLNVCYVYLHAVKSMTKQMKTSGVIPDTFVLNMIIKAYSKCLEVD EAVRVFREMGLYGCEPNGYSYGYLVKGLFEKGRLGQGLGFYKEMKSKGLVPGGSTYMIVICSLAMARKLDDAVGVVFDMLRNSLSPDQLTYKTVLEGMCR DGRGSEALDLLEQWRKLDGLMGEKVYKALNEHQKSHATVLWRQVRLKGLEFAVQNVGGSSERVPEAGGLQNQSVTALNDDPRRFSSQAAEIEWKLVPSRL ILANATEWPPRRTTRMKVNQYFYGVNGAVRMKMHKPESCEIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIDFELGSGQVIKGWDQGLLGMCVGEKRK LKIPAKLGYGDQGSPPTIPGGATLIFDTELVAVNGKTKGGETAKDSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	0	1
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	1.0	0.9097
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	1.7	0.8987
AT4G17010			unknown protein		Lus10006582 [exp]	2.0	0.8854
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	3.7	0.8553
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	4.7	0.8634
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	5.3	0.9001
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10008095 [exp]	6.3	0.8646
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10025907 [exp]	6.5	0.8272
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	7.3	0.8670
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	8.7	0.8417

Compare expression of checked genes

Lus10038215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.