Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25230 783 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 767 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G54010 170 / 1e-45 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 135 / 4e-37 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48580 107 / 4e-27 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G21640 109 / 6e-26 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25220 99 / 3e-24 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G55520 93 / 2e-21 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 82 / 2e-16 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G64350 74 / 9e-16 FKP12, ATFKBP12, FKBP12 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025888 [exp] 1006 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 881 / 0 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 876 / 0 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10022603 [exp] 172 / 4e-46 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 156 / 2e-40 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10025889 [exp] 107 / 2e-27 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 105 / 3e-26 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 104 / 5e-26 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 107 / 8e-25 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248300 [exp] 853 / 0 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 780 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 530 / 0 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 514 / 1e-177 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 183 / 3e-50 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.002G248200 [exp] 104 / 5e-26 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.001G264400 [exp] 102 / 1e-23 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G059200 [exp] 102 / 1e-23 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G201600 [exp] 93 / 1e-21 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.008G057900 [exp] 90 / 2e-20 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10038216 pacid=23158199 polypeptide=Lus10038216 locus=Lus10038216.g ID=Lus10038216.BGIv1.0 annot-version=v1.0 ATGGAAGAAGACTTCGACCTCCCTACTGCCGGTGACGACCTCATGAACAACCTCGATCTCGGCGGTGTCGACTCCCCCGCTCTCAAAGTCGGCGAGGAGA TGGAGATCGGAAAGGAAGGCTTGAAGAAGAAACTCCTCAAGGAAGGTGAAGGCTGGGACACTCCTGATAACGGCGATGAGGTTGAAGTTCACTACACGGG CACATTGATTGACGGCACCAAGTTCGATTCTAGTCGAGACAGAGGGACGCCGTTCAAATTCGGCCTTGGCCAGGGCCAAGTTATCAAAGGATGGGACTTG GGTATAAAGACGATGAAGAAAGGTGAAAATGCCCTTTTCACAATTCCAGCGGAATTAGCTTATGGTGCTTCTGGTTCTCCGCCAACCATTCCACCCAATG CCACCCTTCAGTTTGATGTTGAGTTGCTCTCCTGGTCTAGCGTCAAGGACATCTGTAAGGACGGTGGGATATTCAAGAAGATTGTGGTGGAAGGAACAAA ATGGGAGAACCCGAAGGATCTTGACGAAGTACTCGTGGCATATGAAGCTCAGCTGGAGAATGGTACTTCCGTTGCAAAGTCTGACGGAGTTGAGTTCACT GTCCAGGAGGGTCATTTATGTCCGGCGATATCAAAGGCTGTGAAGACGATGAAGAAAGGGGAGAAAGCTATTCTGACAGTGAAACCGCAATATGGATTTG GAGACACTGGGAAGCCTGCATCTGCCGATGGAGGTGCTGTTCCGGCCAATGCAACCCTGCAAATAACTCTTGAATTGGTCTCTTGGAAGACTGTATCTTC CATAACTGACGACAAGAAGATCATTAAAAAAATTCTTAAGGAAGGCGAGGGATATGAGAAGCCTAACGATGGCGCCGTCGTTCAGTTGAAATTGATTGGC AAGTTGGAAAATGGCACGGTGTTCTTGAAGAAAGGTCATGATGATGCCGACCAACTGTTTGAGTTCAGAACTGACGAAGAGCAAGTAATTGATGGGCTGG ACAGAGCCGTGATGACAATGAAGAAAGGTGAAGTGGCTTTGGTGATCATATCCCCAGAGTATGCATTTGGGAGTTCCGAGTCAAAACAGGAGCTAGCTGT TGTGCCTCCTAACTCAACTCTTCATTATGAGCTTGAGTTGGTGTCCTTCGTGAAGGATAAGGAGTCCTGGGACATGAATACAGAGGAGAAAATTGAAGCT GCTGGCAAAAAGAAGGAAGAAGGTAATGCACTCTTCAAGGCAGGGAAATACGTGAGGGCATCCAAGAGATACGAGAAGGCTGTTAAATACATAGAGTATG ATACCTCTTTCAGTGACGAGGAGAAAAAGCAGTCCAAGGTATTGAAGGTCGCTTGCAATTTGAATAGTGCTGCTTGTAAGCTGAAATTGAAGGATTACAA AGCAGCGGAGAAGTTGTGCACTAAGGTGTTGGAAATGGATAGCCGAAACGTGAAAGCACTCTATAGGAGAGCACAAGCTTACATCCAGTTGGCGGACTTG GAATTGGCCGAGTTTGACATCAAGAAAGCACTCGAGATTGACCCGGATAATAGAGACGTGAAGCTGGAGTACAAGACACTGAAAGAAAAAATGAGGGAGT ACAATAAGAAGGATGCCAAATTCTACGGGAATATGTTCGCCAAGATGAATAAGCTGGGCCCTCTGGATTCCAATGTAAGCAAAAGCACTTGGTGTGTGAG TTGA
AA sequence Show only first row Show all	>Lus10038216 pacid=23158199 polypeptide=Lus10038216 locus=Lus10038216.g ID=Lus10038216.BGIv1.0 annot-version=v1.0 MEEDFDLPTAGDDLMNNLDLGGVDSPALKVGEEMEIGKEGLKKKLLKEGEGWDTPDNGDEVEVHYTGTLIDGTKFDSSRDRGTPFKFGLGQGQVIKGWDL GIKTMKKGENALFTIPAELAYGASGSPPTIPPNATLQFDVELLSWSSVKDICKDGGIFKKIVVEGTKWENPKDLDEVLVAYEAQLENGTSVAKSDGVEFT VQEGHLCPAISKAVKTMKKGEKAILTVKPQYGFGDTGKPASADGGAVPANATLQITLELVSWKTVSSITDDKKIIKKILKEGEGYEKPNDGAVVQLKLIG KLENGTVFLKKGHDDADQLFEFRTDEEQVIDGLDRAVMTMKKGEVALVIISPEYAFGSSESKQELAVVPPNSTLHYELELVSFVKDKESWDMNTEEKIEA AGKKKEEGNALFKAGKYVRASKRYEKAVKYIEYDTSFSDEEKKQSKVLKVACNLNSAACKLKLKDYKAAEKLCTKVLEMDSRNVKALYRRAQAYIQLADL ELAEFDIKKALEIDPDNRDVKLEYKTLKEKMREYNKKDAKFYGNMFAKMNKLGPLDSNVSKSTWCVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	1.4	0.9214
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	1.4	0.9142
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011902 [exp]	2.4	0.9104
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	4.0	0.9089
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	6.3	0.9006
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	7.7	0.9005
AT2G46170			Reticulon family protein (.1.2...		Lus10041080 [exp]	8.8	0.8763
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	9.2	0.8653
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	10.0	0.8654
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	11.3	0.8823

Compare expression of checked genes

Lus10038216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.