Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07330 721 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT2G24630 659 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT3G28180 655 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT4G31590 650 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT4G07960 635 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT5G22740 370 / 6e-123 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT1G23480 368 / 6e-123 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT5G03760 369 / 9e-123 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G13410 361 / 2e-119 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35650 360 / 7e-119 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025886 [exp] 884 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10039440 [exp] 657 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10039475 [exp] 654 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10007715 [exp] 652 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 652 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10026923 [exp] 652 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 605 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10008646 [exp] 380 / 4e-127 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 368 / 3e-122 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248400 [exp] 761 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.018G009300 [exp] 671 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 670 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G114200 [exp] 669 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.014G190900 [exp] 663 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.005G146900 [exp] 660 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.014G190701 [exp] 424 / 2e-148 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 383 / 5e-128 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 374 / 2e-124 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 373 / 3e-124 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10038217 pacid=23158426 polypeptide=Lus10038217 locus=Lus10038217.g ID=Lus10038217.BGIv1.0 annot-version=v1.0 ATGCTCGGCTGTTTCTGCATCAAGCTCTGCAAACTCAAGCCCATTCCGCCCCCTGCTTACGCTGATGTGGAGGCCATGGAAGGTCATTACCCCATGGTAT TGGTTCAGATCCCAATGTGCAATGAGAGGGAGGTTTACCAGCAATCAATTGCTGCAGTTTGTGTCCAGGATTGGCCGCGGGAGAGAATGCTGGTTCAGGT TTTGGATGATTCTGATGACCCGGATATTCAAGTGCTTATTAAGGGCGAGGTTCAGAAATGGCAGCAGAAGGGTGTCCCCATTGTGTACAGGCATCGTTTT GTACGCACAGGGTATAAGGCTGGTAACCTTAGGTCTGCTATGAGCTGTGATTATCTAAAAGATTGTGAATTCGTGGCTATATTTGATGCTGATTTTCAAC CAGCACCTGACTTCTTGAAGAAAACTATTCCACACTTCAAGGGAAATGACGACCTAGGGCTGGTTCAAACGAGGTGGGCATTTGTGAATAGGGATGAAAA CTTACTCACTAGACTGCAGAATATAAATCTGTCATTCCACTTTGAAGTTGAGCAGCAAGTCAATGGTATTTTCATCAACTTTTTCGGTTTCAATGGAACA GCGGGTGTGTGGAGGATTAAAGCCCTAGAGGAATGTGGAGGCTGGTTGGATCGGACAACTGTTGAAGATATGGATATTGCTGTCCGTGCTCACCTTTGTG GGTGGAAGTTCATCTACCTCAATGATGTCAAGTGCTTATGTGAACTTCCCGAGTCCTATGCAGCATACAAAAAGCAACAGCACCGCTGGCATTCAGGTCC AATGCAGCTGTTTCGTTTATGCTTCATGGACGTGCTCCGATCAAAGTTGAGTGTAGGGAAGAAGGCGAATCTGATACTTCTCTTCTTCCTGCTACGGAAG CTTATACTGCCTTTTTATTCCTTCACTCTCTTCTGCATCATTCTTCCCCTTACAATGTTCCTTCCAGAAGCTCAACTCCCAGCTTGGGTGGTTTGCTATG TTCCGGGCTTCATGTCGGTCTTGAGTATCCTTCCTGAACCACGATCATTCCCATTTATAGTCCCCTACCTCCTCTTTGAGAACACAATGTCCGTCACCAA ATTCCAAGCCATGATATCAGGGTTGTTTCGCCTTGGAAGTTCTTATGAATGGGCAGTCACGAAGAAGTTAGGAAGATCATCAGAAGCAGACTTAACAGTG TTAGCTGAGAAGGAATCAGATCCTCTAGTGGACAGTGCCATTATTGTCCACAGAAGTTCATCGGAATCAAGGCTGGATAATCTGAACAAGATAGAGAGCA GCAAGAAAACAGGGAAGAAGAGAAGAAATCGTTTATACCGCAAGGAACTCGCTCTAGCATTCATACTCTTGACTGCTGCAGCTAGAAGCTTGCTTACTGC TCAGGGAATCCACTTCTACTTCTTGCTATTTCAAGGAATTAGCTTCTTAGTTGTTGGTCTTGATTTGATAGGTGAGCAAGTGAGCTGA
AA sequence Show only first row Show all	>Lus10038217 pacid=23158426 polypeptide=Lus10038217 locus=Lus10038217.g ID=Lus10038217.BGIv1.0 annot-version=v1.0 MLGCFCIKLCKLKPIPPPAYADVEAMEGHYPMVLVQIPMCNEREVYQQSIAAVCVQDWPRERMLVQVLDDSDDPDIQVLIKGEVQKWQQKGVPIVYRHRF VRTGYKAGNLRSAMSCDYLKDCEFVAIFDADFQPAPDFLKKTIPHFKGNDDLGLVQTRWAFVNRDENLLTRLQNINLSFHFEVEQQVNGIFINFFGFNGT AGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYAAYKKQQHRWHSGPMQLFRLCFMDVLRSKLSVGKKANLILLFFLLRK LILPFYSFTLFCIILPLTMFLPEAQLPAWVVCYVPGFMSVLSILPEPRSFPFIVPYLLFENTMSVTKFQAMISGLFRLGSSYEWAVTKKLGRSSEADLTV LAEKESDPLVDSAIIVHRSSSESRLDNLNKIESSKKTGKKRRNRLYRKELALAFILLTAAARSLLTAQGIHFYFLLFQGISFLVVGLDLIGEQVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10038217 [exp]	0	1
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	1.4	0.8473
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Lus10017047 [exp]	1.7	0.8512
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	5.0	0.8246
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018165 [exp]	7.2	0.8370
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	13.1	0.8192
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	15.1	0.8245
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	15.2	0.8203
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	15.9	0.8065
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	16.2	0.8172
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	16.2	0.8030

Compare expression of checked genes

Lus10038217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.