Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 447 / 6e-155 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 241 / 1e-74 ARM repeat superfamily protein (.1) AT1G23030 211 / 1e-61 PUB11 ARM repeat superfamily protein (.1) AT3G46510 202 / 4e-58 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 198 / 8e-58 ARM repeat superfamily protein (.1.2) AT3G54850 201 / 1e-57 ATPUB14 plant U-box 14 (.1) AT2G28830 192 / 2e-53 AtPUB12 PLANT U-BOX 12 (.1) AT5G18330 174 / 3e-49 ARM repeat superfamily protein (.1) AT5G18340 171 / 7e-48 ARM repeat superfamily protein (.1) AT5G42340 162 / 1e-43 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025885 [exp] 810 / 0 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10020413 [exp] 509 / 1e-178 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10009594 [exp] 506 / 9e-178 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10037970 [exp] 223 / 1e-65 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 219 / 4e-64 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 219 / 6e-64 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 209 / 1e-60 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 206 / 9e-58 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 172 / 1e-46 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248600 [exp] 550 / 0 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 473 / 7e-165 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052500 [exp] 442 / 4e-153 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 420 / 5e-143 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.008G035700 [exp] 216 / 3e-63 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 211 / 2e-61 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 211 / 3e-61 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 209 / 7e-61 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 209 / 1e-60 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 206 / 1e-59 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10038218 pacid=23158122 polypeptide=Lus10038218 locus=Lus10038218.g ID=Lus10038218.BGIv1.0 annot-version=v1.0 ATGGCCAAGACAGCAGGGTTCCATTCCAATCCAACCCAAATGGCCAGAGCCGCCGAATTGAAGAAGCAGCTCCAGAAGCTTGTCAACACTATTACCGCCG ATGACGATTGCCGCGCCGACACTATCGATCAGGCTAATCAAACCCTCCTTGCCCTCAAGGAACTCAAATTCCCCCGCTGCAGCAAGAAAAATTCCCCTCT TTCTTTTAACCTCCAGGACGGCGTCTCCGCCGCCTCCTGTCCCGAGGAGTTCAAGTGTCCTCTTTCCAATGAATTGATGAGAGATCCTGTTATTCTTTGC ACCGGCCTGACTTATGATCGACCATTCATTGCGAAATGGCTAGAAGAAGGAAATCGCACTTGCCCAAAGACGCAACAAGTCCTCTCTCACACAAATCTCA CTCCTAATCACTTGATATGGGAGATGATATCACACTGGTGCAAGACTCAAGGGGTTGAGTTACTGGATCCCATACATTACGTTAACGAAGCAGCAATAAC AGAAGCTGATCGTCACAGGTTTCTGTCCTTACTCGATAAATTGTCTTCTACAATTGCTGAACAGAAGGAAGCTGCTAAGGAGTTTCGACAGTTGACGAAA AGGAAGCCTTCATTCAGAGCCTTGTTCGGAGATTTCGACGGTGCTATTCCCCAGTTGCTCAGTCCACTCTCTAAAACCAAAGTGGCAGATTCTGACCTTC AAGAAGATGTGATCACTACCCTCTTGAATCTGTCAATCCACGATGATAACAAGAAGCTCGTGGGCGAAACCCCTACCGCGATACCGGTCCTGATGGAAGC GCTAAGAAGTAATGCCACCATTGAAGCTAGGACCAATGCTGCAGCAGCACTCTTCACATTGTCAGCTCTCGATAGCAACAAGGTGCTCATCGGGAAATCC GGAGCCTTGAACCCTCTGATAAACCTTTTAGAGGAAGGACATCCTTGGGCTATGAAAGACGTTGCGTCTGCAATTTACAACGTATGCATCTTGTACGAAA ACAGGGCGAAAGCAGTGAAGGCAGGCGCCGTGAGTGGAGTTCTGGACAAGATAAGGGTAGGTGTGTTGGTAAATGAGTTGTTGGCTATCTTGGCAATGCT GTGTAGTTACCAGGGGGCTCTGATCGTGATAGGCGGAGAAGAGGAAGGAGTCGGTTGCCTACTCCGAATAATAAGACAGAGCACGTGCGAACAAAGCAAG GAGAACTGTGTCGCGATCGTTCACGCAATCTGTTTTCACGATCGTAGCAAGTGTAAGCAAGTGAGGGATGAAGAGAAAGTGTACGGGATGATCTCTAAAC TAGCGAGGGATGGAACTTCAAGGGCCAAGAGAAAGGCAAGTGGGATTCTTGACAGATTGAACAGGGCTGTCAATTTTACAAATACAGCGTGA
AA sequence Show only first row Show all	>Lus10038218 pacid=23158122 polypeptide=Lus10038218 locus=Lus10038218.g ID=Lus10038218.BGIv1.0 annot-version=v1.0 MAKTAGFHSNPTQMARAAELKKQLQKLVNTITADDDCRADTIDQANQTLLALKELKFPRCSKKNSPLSFNLQDGVSAASCPEEFKCPLSNELMRDPVILC TGLTYDRPFIAKWLEEGNRTCPKTQQVLSHTNLTPNHLIWEMISHWCKTQGVELLDPIHYVNEAAITEADRHRFLSLLDKLSSTIAEQKEAAKEFRQLTK RKPSFRALFGDFDGAIPQLLSPLSKTKVADSDLQEDVITTLLNLSIHDDNKKLVGETPTAIPVLMEALRSNATIEARTNAAAALFTLSALDSNKVLIGKS GALNPLINLLEEGHPWAMKDVASAIYNVCILYENRAKAVKAGAVSGVLDKIRVGVLVNELLAILAMLCSYQGALIVIGGEEEGVGCLLRIIRQSTCEQSK ENCVAIVHAICFHDRSKCKQVRDEEKVYGMISKLARDGTSRAKRKASGILDRLNRAVNFTNTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	0	1
AT5G16550			unknown protein		Lus10033497 [exp]	2.8	0.8149
AT5G53590			SAUR-like auxin-responsive pro...		Lus10005781 [exp]	5.6	0.7933
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	7.4	0.8249
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	9.1	0.8431
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	9.2	0.8213
AT5G16550			unknown protein		Lus10002085 [exp]	11.7	0.8345
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	15.1	0.8081
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	22.5	0.7762
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	23.5	0.8033
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	25.6	0.8319

Compare expression of checked genes

Lus10038218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.