Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07370 372 / 4e-131 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT2G42810 71 / 1e-13 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G56440 63 / 6e-11 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G45920 61 / 2e-10 U-box domain-containing protein (.1) AT3G17970 60 / 4e-10 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT3G61390 57 / 5e-09 RING/U-box superfamily protein (.1.2) AT1G01670 56 / 8e-09 RING/U-box superfamily protein (.1) AT1G01660 56 / 9e-09 RING/U-box superfamily protein (.1) AT4G08320 56 / 1e-08 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G11260 55 / 2e-08 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025884 [exp] 564 / 0 AT3G07370 375 / 5e-132 carboxyl terminus of HSC70-interacting protein (.1) Lus10020412 [exp] 437 / 1e-156 AT3G07370 358 / 2e-125 carboxyl terminus of HSC70-interacting protein (.1) Lus10009593 [exp] 430 / 1e-153 AT3G07370 356 / 2e-124 carboxyl terminus of HSC70-interacting protein (.1) Lus10043471 [exp] 62 / 1e-10 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 62 / 2e-10 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10018004 [exp] 60 / 9e-10 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10031418 [exp] 59 / 1e-09 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 57 / 4e-09 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 57 / 4e-09 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248700 [exp] 404 / 2e-143 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.005G177400 [exp] 61 / 2e-10 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 61 / 3e-10 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G141800 [exp] 60 / 7e-10 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.001G205300 [exp] 57 / 7e-09 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G008400 [exp] 56 / 7e-09 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G216300 [exp] 56 / 9e-09 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.007G051000 [exp] 56 / 1e-08 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.015G038600 [exp] 56 / 1e-08 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.008G177100 [exp] 56 / 2e-08 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10038219 pacid=23158225 polypeptide=Lus10038219 locus=Lus10038219.g ID=Lus10038219.BGIv1.0 annot-version=v1.0 ATGGGGCAGGGAACTGTATTGACTCCGGCGAAACAAGCTGAGAGATTGAAAGAGGATGGAAATGTCTACTTCAAGAAAGAACGATTCGCTGCTGCCATCG ACGCTTACACCGAGGCGATTGTGCTGTGCCCTAATGTTGCGGTGTACTGGACCAATCGAGCTCTTTGTCATCGTAAACGCAATAATTGGAAGAAAGTTGA AGAGGATTGTCTTTCTGCTATCAAGCTTGATAACAATTCATTTAAGGCTCACTATATGCTGGGACTTGCTTTACTCCAGAGGGAAGAGTACACAGAAGGA CTCAAGGCATTGGAAAGAGCAATGAACCTTAGCAGGGATGCGAACCCACCAGGCTATATGGTGGAGGAGGTTTGGGAAGAGATTGCGAAAACAAAATACC TGCTGTGGGAGCAAGCATCTACACAACGTTCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGAGCGCTCTTAAAGAGAAGTACTTTCTTGATGATAA TAAGAAAGATGGAGTTCCGGAGGGGGCAGCTGCCTTCCATGAGCAGCAGTTGGATACGCTAAAGAAAGTGTTTGAGAAGGCAGCAGAAGATGACATCCCG ACTGAGATACCAGATTATCTTTGTTGCAAAATCTCGCTCGATATCTTCCATGACCCTGTCATCACGCCAAGTGGGTTAACGTACGAAAAAGCAGTGATTC TTGATCATCTTCAGAAGGTGGGGAGGTTTGATCCAATCACACGGGTAGAACTTGAACCATCTCAGTTGATCCCGAACTTGGCAATCAAGGAAGCTGTCCA ATCGTATCTTGAGAAACATGGTTGGGCATATAAAGCTGACTGA
AA sequence Show only first row Show all	>Lus10038219 pacid=23158225 polypeptide=Lus10038219 locus=Lus10038219.g ID=Lus10038219.BGIv1.0 annot-version=v1.0 MGQGTVLTPAKQAERLKEDGNVYFKKERFAAAIDAYTEAIVLCPNVAVYWTNRALCHRKRNNWKKVEEDCLSAIKLDNNSFKAHYMLGLALLQREEYTEG LKALERAMNLSRDANPPGYMVEEVWEEIAKTKYLLWEQASTQRSWELQSLKEACESALKEKYFLDDNKKDGVPEGAAAFHEQQLDTLKKVFEKAAEDDIP TEIPDYLCCKISLDIFHDPVITPSGLTYEKAVILDHLQKVGRFDPITRVELEPSQLIPNLAIKEAVQSYLEKHGWAYKAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	0	1
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	2.2	0.9463
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	2.2	0.9529
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10005983 [exp]	2.4	0.9516
AT4G28290			unknown protein		Lus10039825 [exp]	2.8	0.9477
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	6.5	0.9493
AT5G13500			unknown protein		Lus10009691 [exp]	7.1	0.9370
AT3G53490			unknown protein		Lus10015041 [exp]	7.5	0.9386
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	9.2	0.9411
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	9.8	0.9459
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	12.0	0.9429

Compare expression of checked genes

Lus10038219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.