Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48545 209 / 4e-69 HINT3 histidine triad nucleotide-binding 3 (.1) AT1G31160 52 / 2e-08 HINT2 ,HINT 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) AT3G56490 49 / 1e-07 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) AT5G58240 43 / 2e-05 FHIT FRAGILE HISTIDINE TRIAD (.1.2) AT4G16566 40 / 0.0003 HINT4 histidine triad nucleotide-binding 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025883 [exp] 325 / 1e-114 AT5G48545 223 / 1e-74 histidine triad nucleotide-binding 3 (.1) Lus10035409 [exp] 51 / 3e-08 AT3G56490 224 / 1e-76 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10031011 [exp] 50 / 5e-08 AT3G56490 228 / 2e-78 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10036217 [exp] 50 / 4e-07 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248800 [exp] 218 / 8e-73 AT5G48545 227 / 3e-76 histidine triad nucleotide-binding 3 (.1) Potri.015G124700 [exp] 53 / 7e-09 AT1G31160 224 / 1e-75 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) Potri.016G023700 [exp] 49 / 2e-07 AT3G56490 217 / 2e-73 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Potri.013G161100 [exp] 40 / 0.0002 AT5G58240 149 / 8e-47 FRAGILE HISTIDINE TRIAD (.1.2) Potri.019G133200 [exp] 39 / 0.0003 AT5G58240 158 / 1e-50 FRAGILE HISTIDINE TRIAD (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01230 [flax] [poplar] HIT HIT domain
Representative CDS sequence Show only first row Show all	>Lus10038220 pacid=23158141 polypeptide=Lus10038220 locus=Lus10038220.g ID=Lus10038220.BGIv1.0 annot-version=v1.0 ATGGATTCCCCTAGGTTATCCTTTATTCGCTCCCACCTTCTACCCACCACCTCTCCTCCTATTGCTTCCCCATCCCAATTCACTCCTTCCAATTCTTCTT CTTCTGATTTTATGACCTCCGCTGGCGATGGAAAGACGACCCAAGACTGTGTCTTTTGCTCTATTGTTCGCGGGGATTCCCCTGCTCTCAAACTTTACGA AGATGATTTGTGCCTTTGTATTTTGGATAGAAACCCATTGAGTCATGGGCATTCTCTTATAATACCAAAGACTCATTTTGCTTGCTTGGAGTCCACCCCT CCATCTTTGATTGCAGCAATGTGTTCAAAGGCACCTTTTATTGCAAATGCTCTCATGAAGGCTAGTGGGTCTGATTCATTCAACCTACTAGTGAATAATG GGGCTGCTGCAGGCCAAGTTATATACCATACACATATCCATATAATCCCACGCAAGACAAATGATTGCTTGTGGACAACTGAGGAAGCTTCTCATCTCGT TTCTTCAGTCCGAGAACAGTTGATGAACGTTTCCGGGAATTACAAGGCCGGCCACGAAGCTGGGCTACCTCGATGCTCTCTCTGA
AA sequence Show only first row Show all	>Lus10038220 pacid=23158141 polypeptide=Lus10038220 locus=Lus10038220.g ID=Lus10038220.BGIv1.0 annot-version=v1.0 MDSPRLSFIRSHLLPTTSPPIASPSQFTPSNSSSSDFMTSAGDGKTTQDCVFCSIVRGDSPALKLYEDDLCLCILDRNPLSHGHSLIIPKTHFACLESTP PSLIAAMCSKAPFIANALMKASGSDSFNLLVNNGAAAGQVIYHTHIHIIPRKTNDCLWTTEEASHLVSSVREQLMNVSGNYKAGHEAGLPRCSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10038220 [exp]	0	1
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10020199 [exp]	5.7	0.8896
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10005986 [exp]	8.8	0.8188
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	10.0	0.8815
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	10.2	0.8436
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	12.5	0.8728
AT3G52240			unknown protein		Lus10034158 [exp]	15.5	0.8026
AT3G21570			unknown protein		Lus10034002 [exp]	19.0	0.8410
AT3G21570			unknown protein		Lus10012773 [exp]	20.5	0.8370
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	24.5	0.8495
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10030219 [exp]	26.2	0.7695

Compare expression of checked genes

Lus10038220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.