Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25250 399 / 1e-136 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 385 / 5e-132 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 252 / 1e-79 Protein kinase superfamily protein (.1) AT3G20830 242 / 7e-76 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G47750 201 / 2e-58 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G79250 199 / 1e-57 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 198 / 3e-57 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G58140 200 / 2e-56 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G52890 199 / 4e-56 KIPK KCBP-interacting protein kinase (.1.2) AT4G26610 192 / 1e-55 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025882 [exp] 782 / 0 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10009592 [exp] 479 / 8e-168 AT3G25250 429 / 7e-149 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020411 [exp] 352 / 4e-117 AT3G25250 318 / 3e-104 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038753 [exp] 203 / 7e-59 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 202 / 2e-58 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 199 / 2e-58 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 201 / 4e-58 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10008634 [exp] 200 / 3e-56 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10035591 [exp] 200 / 3e-56 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248900 [exp] 416 / 1e-143 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.003G205800 [exp] 249 / 3e-78 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 240 / 8e-75 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G024000 [exp] 200 / 3e-59 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 204 / 4e-58 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 203 / 1e-57 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 201 / 2e-57 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 199 / 2e-57 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.010G236200 [exp] 196 / 2e-57 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 202 / 4e-57 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038221 pacid=23158333 polypeptide=Lus10038221 locus=Lus10038221.g ID=Lus10038221.BGIv1.0 annot-version=v1.0 ATGAACGATCGCCCCAATCAAACTGACCACACCATCGTCCCTATCCTAGACCTCGACACCCTCTCCGTCATTTCTCCCGTTGGCCGCGGAGCCAAAGGCG TCGCGTTTCTCGTCAGGAACAAGCAATTCGACGAGTCATGGGCTCTCAAAGTCATCCTCCACGATTTAGTCGAGAAGAAGAGCTCCGCCTCCGGGAGCGA GTACAAGCGTATTTGGTTGGAACAGCGGGTCCTCAGCCGCTTCAAGCACCCGCTTCTTCCTCGCCTCCGTGGCATTCTCAGCACCGATAAGATCGTCGCT TACGCCATCGATTACTGCCCTGGCCGTGACCTTAATCACCTCCGTAAGCAACAGACAGAGAATATGTTCTCCCCTGACATCATCAGATTTTACGCGGCGG AATTGGTTCTGGCGTTGGAGTACCTCCACAACAATGGCATCGCTTACAGAGACTTGAAGCCCGAGAACATATTGATTCAAGAGAACGGCCACATAATGCT CGTAGATTTCGATCTCTCCGCCGAACTCCCTCCGGCCACACCCAACAAACCTCTGCCGAAGAAGCTTCCACCCGCCGCCGCAGCAGTTAGATCGAATTCA ACCCGTCGGAAGCGAGCATTGAGCTTGCAGCTATTCTGCAAGTGCTCTTCGGGGATCACGCCGGAGGAATGCGTCGTGGAGAACAACCGACCTGAGCGTC AACAGTCAATAATTCCTTCGGCTGGGAAATCGAACTCGTTCGTCGGGACGGAAGAGTACGTGGCCCCGGAGGTCATCCAAGGGTACGGCCACGACTTCTC TGTGGATTGGTGGTCCCTCGGCGTGGTGATTTACGAGATGCTGTACGGACGGACACCATTCCGGGGCACGAATCGGAAAGACACGTTCTACCGGATCTTG ACTCAGAGTCCGGAGCTGGTCGGCGAGGCGACGCCGTTGAGGGACTTAATCTGGAGACTTCTGGTGAAGGATCCTAGAGAGAGGATGACGGTGGACGAAA TCAAGGGACACGAGTTCTTCAAGGGGCTGCATTGGGAATCGGTGGTTCAAGTCTCGCGGCCGCCGTACATTCCGCCGAGTGTTTGGGGAGACAAGGACGA TGGCAAAAATGTGAATAAGAGCATTGATGTGGAGTCTTTTGTCCAGAGAGTATTCAGCGCTAGCAGTGACAACGACGACGGAACGAAGGAGGCGGAAAAG AGTAAAGTAGCGGACGGCGGTGGGACGGAAGTGGAGAAGAGGGAAATGGTGGAAGCCACCAATCGGAATAATAATCAACCGCCTCGAGAAGGAGGCGACG ATAATCAGAATTTTGTGGTTTTCTAA
AA sequence Show only first row Show all	>Lus10038221 pacid=23158333 polypeptide=Lus10038221 locus=Lus10038221.g ID=Lus10038221.BGIv1.0 annot-version=v1.0 MNDRPNQTDHTIVPILDLDTLSVISPVGRGAKGVAFLVRNKQFDESWALKVILHDLVEKKSSASGSEYKRIWLEQRVLSRFKHPLLPRLRGILSTDKIVA YAIDYCPGRDLNHLRKQQTENMFSPDIIRFYAAELVLALEYLHNNGIAYRDLKPENILIQENGHIMLVDFDLSAELPPATPNKPLPKKLPPAAAAVRSNS TRRKRALSLQLFCKCSSGITPEECVVENNRPERQQSIIPSAGKSNSFVGTEEYVAPEVIQGYGHDFSVDWWSLGVVIYEMLYGRTPFRGTNRKDTFYRIL TQSPELVGEATPLRDLIWRLLVKDPRERMTVDEIKGHEFFKGLHWESVVQVSRPPYIPPSVWGDKDDGKNVNKSIDVESFVQRVFSASSDNDDGTKEAEK SKVADGGGTEVEKREMVEATNRNNNQPPREGGDDNQNFVVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	0	1
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	1.0	0.8679
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	1.4	0.8640
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	2.0	0.8360
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	3.0	0.8480
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10037380 [exp]	4.2	0.8036
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	6.9	0.8272
AT5G51040			unknown protein		Lus10043024 [exp]	7.1	0.8303
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	12.3	0.7669
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	13.5	0.8137
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	13.9	0.8100

Compare expression of checked genes

Lus10038221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.