Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25280 189 / 3e-58 Major facilitator superfamily protein (.1) AT3G25260 164 / 1e-48 Major facilitator superfamily protein (.1) AT1G27040 150 / 4e-43 Major facilitator superfamily protein (.1.2) AT1G69850 147 / 3e-42 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT5G62730 134 / 2e-37 Major facilitator superfamily protein (.1) AT1G33440 124 / 1e-33 Major facilitator superfamily protein (.1) AT1G59740 116 / 9e-31 Major facilitator superfamily protein (.1) AT3G21670 105 / 9e-27 Major facilitator superfamily protein (.1) AT1G68570 102 / 1e-25 Major facilitator superfamily protein (.1) AT1G12110 100 / 7e-25 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025881 [exp] 256 / 4e-84 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1) Lus10013276 [exp] 143 / 2e-40 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 140 / 3e-39 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 139 / 4e-39 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 137 / 2e-38 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 135 / 1e-37 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 130 / 8e-36 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 129 / 1e-35 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10024457 [exp] 127 / 9e-35 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249100 [exp] 202 / 2e-63 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 144 / 5e-41 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 136 / 6e-38 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.005G001400 [exp] 132 / 2e-36 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 126 / 2e-34 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 122 / 7e-33 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 119 / 1e-31 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.001G272900 [exp] 115 / 1e-30 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 114 / 3e-30 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 112 / 3e-29 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10038222 pacid=23158260 polypeptide=Lus10038222 locus=Lus10038222.g ID=Lus10038222.BGIv1.0 annot-version=v1.0 ATGCACAGCGTTCGTACGAGGCAGAGTCCCCGCACGGTTCCACATCTACCAACAGCGCTCAAGAGGATCGGACTACGCCTGGCACTTGCCTCCATGTTCA TGGCTGTGGCTGCAGTCATTGAGCATAAAAGGCGGACTGCTGATGCTCAGCTGTCCGTCTTTTGGCTGAGCTGGCAGTATTTTTTCTCAGGGGTATCGGA TATGCTGACCCTTGGAGGGATGCTCGAGTTTTTCTACTTGGAGGCGCCTAGTAGCATGAGGAGCATGTGTACCGCATTGGCCTGGGCGTCGACTTCGATG GGTTACTTCCTCAGCTCGGTTCTGGTCACTTTAATTAACGATGTAACGGGGAGACTCGGTACCCAGTGGCTCGGAGGTCAGGATTTGAATCGGAACCGGT TGGATCTGTTCTATGCACTTCTTTGTATTCTGAATTCTGTGAATTTGGTGAACTATGTGGTCTGGGCTAAGAGGTACTAG
AA sequence Show only first row Show all	>Lus10038222 pacid=23158260 polypeptide=Lus10038222 locus=Lus10038222.g ID=Lus10038222.BGIv1.0 annot-version=v1.0 MHSVRTRQSPRTVPHLPTALKRIGLRLALASMFMAVAAVIEHKRRTADAQLSVFWLSWQYFFSGVSDMLTLGGMLEFFYLEAPSSMRSMCTALAWASTSM GYFLSSVLVTLINDVTGRLGTQWLGGQDLNRNRLDLFYALLCILNSVNLVNYVVWAKRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25280			Major facilitator superfamily ...		Lus10038222 [exp]	0	1
AT4G04480			unknown protein		Lus10015548 [exp]	8.8	0.7323
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	8.9	0.7395
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	10.5	0.7529
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	23.3	0.7299
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	33.9	0.7280
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10002720 [exp]	34.3	0.6916
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	37.6	0.7127
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	40.6	0.7141
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	41.8	0.7093
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	46.3	0.7211

Compare expression of checked genes

Lus10038222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.