Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02290 690 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 683 / 0 ATCEL2 cellulase 2 (.1) AT1G23210 558 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G70710 556 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G71380 538 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 523 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G39010 502 / 4e-175 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G23560 479 / 1e-166 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G39000 479 / 2e-166 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G09740 469 / 1e-162 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025880 [exp] 858 / 0 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10008208 [exp] 701 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10013418 [exp] 548 / 0 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 548 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 546 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10018077 [exp] 535 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 532 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10002930 [exp] 510 / 2e-178 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10027205 [exp] 501 / 9e-175 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126900 [exp] 703 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 702 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 596 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.008G132700 [exp] 564 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 548 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.010G109200 [exp] 548 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.004G162200 [exp] 542 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G127900 [exp] 528 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.009G123900 [exp] 525 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G128000 [exp] 495 / 3e-172 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10038223 pacid=23158166 polypeptide=Lus10038223 locus=Lus10038223.g ID=Lus10038223.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTCCACCGTATTATTACTATTTCTTCCCACTCTCATTACCCTTTCTCTCTTCTGTTTTCTCACCAGTGCCCACCCTGTTTCTCGACACA ATTACAAAGACGCCCTTGCTAAATCGATCCTGTTCTTCGAAGGGCAGAGGTCCGGGAAGCTCCCGCACAGCCAGAGGATGAAATGGAGGGCGAACTCCGG CTTATCCGACGGCTCCACCGCCAACGTCAACCTGGTCGGAGGGTACTACGACGCCGGCGACAATGTTAAATTCGGTTTCCCGATGGCGTTCACCACCACA ATGCTGTCGTGGAGCGTCATTGAATTTGGCGGGATGATGAAAGACGAATTGCCACATGCAAAACAAGCAATTCGTTGGGCCACCGATTACTTGCTCAAAG CCACTAATCATCCTGACACCATTTACGTCCAGGTGGGAGATGCCAACGAGGATCACGCCTGCTGGGAAAGACCAGAGGACATGGACACTCGTCGTACCGT CTACAAGATTGACAAGAACACCCCTGGCACCGAAGTGGCAGGGGAAACAGCGGCAGCTCTGGCTGCTGCGTCTCTTGTCTTCAGGACAACTCATCCGTAC TACACCAAACTCCTATTGAGCAGGGCAATGAGGGTTTTCAGTTTCGCCAACAAGAATCGTGGATCGTACAGCGATGGTGCGTTGAGAAATCAAGTGTGTC CCTTTTATTGTTCCTACTCTGGTTATCAGGATGAGCTGCTCTGGGCTGCGGCCTGGCTCCACAGGGCCACTAAACTTAGCACCTATCTCAACTATGTCAA GGCCAATGCCCAGAGCCTTGGGGCGGACCAATATGACAACACGTTTGGTTGGGACAACAAGCACGTAGGAGCCAGGATCCTGTTGTCGCGGACTTTTCTT CTCCGTAAACATGCTGATTTCGAGGACTTCAAGGAACATTCTGACAATTTCGTTTGTTCGATTGTCCCCGGTGTGCCGAACTATGCCTCTCAGTACACAC CGGGAGGGCTACTTTACAAGTTGGGGGAGGGGAATATGCAGTATGTGACATCGACTTCGTTCTTGCTCTTGGCATATGCTAAATATTTGGCCGTGTCAGG AAAATCCGTAAATTGCGGAGGTACTGTTGTCCATGCTGGGAAGCTGAGGTCGATTGCTAAGCGGCAAGTGGACTATTTGCTAGGGGAGAATCCTTTGAAA ATGTCTTATATGGTTGGGTATGGGAAGAAGTACCCACTGAGGATCCACCATAGAGGGTCGTCTTTGCCATCTATCCTGGTCAAACCAGATCGAATAGGGT GCTCGTCCGGGTACGGGGTGATGTACTCGCAGTCACCCAATCCAAACGTGCTTGTGGGTGCCGTTGTGGGCGGACCGGATCAGGGCGATGGATTTTCAGA CCAGAGGAACGATTATGAGCATTCAGAACCAGCTACTTATATCAATGCGCCGTTGGTTGGCTCGTTGGCTTATCTTGCTCATGCATTTGGACAGATTTAA
AA sequence Show only first row Show all	>Lus10038223 pacid=23158166 polypeptide=Lus10038223 locus=Lus10038223.g ID=Lus10038223.BGIv1.0 annot-version=v1.0 MASSSTVLLLFLPTLITLSLFCFLTSAHPVSRHNYKDALAKSILFFEGQRSGKLPHSQRMKWRANSGLSDGSTANVNLVGGYYDAGDNVKFGFPMAFTTT MLSWSVIEFGGMMKDELPHAKQAIRWATDYLLKATNHPDTIYVQVGDANEDHACWERPEDMDTRRTVYKIDKNTPGTEVAGETAAALAAASLVFRTTHPY YTKLLLSRAMRVFSFANKNRGSYSDGALRNQVCPFYCSYSGYQDELLWAAAWLHRATKLSTYLNYVKANAQSLGADQYDNTFGWDNKHVGARILLSRTFL LRKHADFEDFKEHSDNFVCSIVPGVPNYASQYTPGGLLYKLGEGNMQYVTSTSFLLLAYAKYLAVSGKSVNCGGTVVHAGKLRSIAKRQVDYLLGENPLK MSYMVGYGKKYPLRIHHRGSSLPSILVKPDRIGCSSGYGVMYSQSPNPNVLVGAVVGGPDQGDGFSDQRNDYEHSEPATYINAPLVGSLAYLAHAFGQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10038223 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	2.0	0.8798
					Lus10031340 [exp]	6.5	0.8786
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	10.8	0.8850
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	12.4	0.8766
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	14.3	0.8631
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	18.5	0.8353
AT1G09812			unknown protein		Lus10037361 [exp]	18.5	0.8775
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	24.1	0.8754
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	38.0	0.8646
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	38.6	0.8743

Compare expression of checked genes

Lus10038223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.