Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25290 257 / 5e-85 Auxin-responsive family protein (.1.2) AT4G12980 251 / 1e-82 Auxin-responsive family protein (.1) AT5G47530 232 / 4e-75 Auxin-responsive family protein (.1) AT5G35735 221 / 1e-70 Auxin-responsive family protein (.1) AT4G17280 218 / 9e-70 Auxin-responsive family protein (.1) AT3G59070 143 / 3e-40 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 141 / 4e-40 Auxin-responsive family protein (.1) AT3G07570 121 / 2e-32 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 109 / 6e-28 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G48750 68 / 2e-13 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025877 [exp] 402 / 7e-143 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 238 / 3e-77 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10006398 [exp] 233 / 2e-76 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10002274 [exp] 232 / 6e-75 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 222 / 6e-71 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10017564 [exp] 197 / 2e-61 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 192 / 2e-59 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10001736 [exp] 147 / 3e-42 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10001162 [exp] 147 / 4e-42 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249300 [exp] 294 / 2e-99 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.006G015000 [exp] 230 / 2e-74 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 225 / 2e-72 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 225 / 2e-72 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 224 / 5e-72 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 216 / 1e-68 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 214 / 3e-68 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 160 / 4e-47 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 158 / 2e-46 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 158 / 2e-46 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10038225 pacid=23158438 polypeptide=Lus10038225 locus=Lus10038225.g ID=Lus10038225.BGIv1.0 annot-version=v1.0 ATGTATTTTCTTAATACGCTAAGGGGGGCTCTGGATTTGAAAAGAGGGCAGAGTGTTGACGTCGCTGGGGGAGGAAACTCCGGCCTAAAGAAAAAGAACA TTCACGGTGCTTTGAATGCGGTGAGCTGGGGAATTCTGTTTCCGGTGGGAGCGATAATCGCTAGGTACGTGAGAAGTTTCCCGTCCGCGGATCCAACTTG GTTTTATCTCCATGCTGGCTGTCAGGTCTCCGGCTATGCAATCGGAGTATCAGGATGGGCAACCGGGATGAAGCTGGGAAGTCAATCCAAAGGGATTCAG TTCACAGGTCACCGTAACATTGGAATTGCTCTTTTCGCAATAGCAACTCTCCAGATGTTTGCGCTGTTCTTGAGACCATCGAAAGAGCATAAGTTGAGAA AGTACTGGAATGTCTACCACCACGGAGCTGGATACGCCATACCTGTGCTGGGATTACTGAACGTGTTCAAGGGTCTAGACATGTTGCAGCCGGAGAGCAA GTGGAGGACGGCGTATATAGCTGTGATTGCTGCACTGGGTGGGATCGCAGTGTTGTTGGAAATCGTCACTTGGATTATGGTTCTGAGGAGGAAATCCAAT CAATCCACCAAACCTTACGATGGCGGATACAGCAACAATGGGCATAGCAGGCAGCAACAACCCCTCACTTCTTAG
AA sequence Show only first row Show all	>Lus10038225 pacid=23158438 polypeptide=Lus10038225 locus=Lus10038225.g ID=Lus10038225.BGIv1.0 annot-version=v1.0 MYFLNTLRGALDLKRGQSVDVAGGGNSGLKKKNIHGALNAVSWGILFPVGAIIARYVRSFPSADPTWFYLHAGCQVSGYAIGVSGWATGMKLGSQSKGIQ FTGHRNIGIALFAIATLQMFALFLRPSKEHKLRKYWNVYHHGAGYAIPVLGLLNVFKGLDMLQPESKWRTAYIAVIAALGGIAVLLEIVTWIMVLRRKSN QSTKPYDGGYSNNGHSRQQQPLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25290			Auxin-responsive family protei...		Lus10038225 [exp]	0	1
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	4.9	0.9301
AT5G22930			Protein of unknown function (D...		Lus10038677 [exp]	4.9	0.9252
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	5.0	0.9486
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	8.4	0.9464
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	11.6	0.9226
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	13.2	0.9403
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	13.4	0.9185
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	14.3	0.9386
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	16.6	0.9379
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	18.2	0.9340

Compare expression of checked genes

Lus10038225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.