Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 242 / 5e-80 receptor-like protein kinase-related family protein (.1) AT3G22060 145 / 2e-42 Receptor-like protein kinase-related family protein (.1) AT3G58310 117 / 1e-31 Domain of unknown function (DUF26) (.1) AT2G31620 113 / 6e-30 Receptor-like protein kinase-related family protein (.1) AT4G05200 114 / 1e-28 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G21910 107 / 2e-27 Domain of unknown function (DUF26) (.1) AT4G23180 106 / 6e-26 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G21990 101 / 1e-25 Domain of unknown function (DUF26) (.1) AT4G38830 104 / 3e-25 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G20670 101 / 3e-25 Domain of unknown function (DUF26) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025875 [exp] 419 / 9e-150 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1) Lus10027145 [exp] 130 / 1e-36 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10018377 [exp] 122 / 3e-31 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018380 [exp] 118 / 2e-30 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 110 / 4e-27 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 105 / 1e-25 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10026629 [exp] 102 / 2e-24 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018379 [exp] 102 / 2e-24 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10022286 [exp] 98 / 7e-24 AT3G22060 119 / 3e-32 Receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249600 [exp] 228 / 1e-74 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 153 / 1e-45 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.007G120700 [exp] 150 / 3e-44 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 148 / 9e-44 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 148 / 1e-43 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.017G040450 [exp] 147 / 5e-43 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G039966 [exp] 145 / 2e-42 AT3G22060 273 / 5e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 143 / 1e-41 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.017G040049 [exp] 142 / 6e-41 AT3G22060 221 / 9e-72 Receptor-like protein kinase-related family protein (.1) Potri.017G040300 [exp] 141 / 9e-41 AT3G22060 226 / 3e-74 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10038227 pacid=23158317 polypeptide=Lus10038227 locus=Lus10038227.g ID=Lus10038227.BGIv1.0 annot-version=v1.0 ATGAACATGATGAAGATAAACACACTCCCAGCTGCCATTTCCTTCTTCCTTCTCCTCCCCATCTTACTCGTTACAGCAACTGACCCACTCGGAGAATTCT GCAACAAGGACACCACCAAGCTCAATCCTCAATCCTCCTCCAACCTCCAAAAACTCCTTTCCCAACTCGTCTCCAGGACTACCTCTTCCGGGTACTCTGT AGCTTCGTCCGGAACAGGCTCCGACCAACTCCACGGCCTGGCACAGTGCAGGGGAGACGTCAGCACCGGCGACTGCTCCACCTGCATCCAAGAAGCCGCC GCTGAGATCACCCGCCGCTGTACTAAGCTACCCGATGCCAGAATCTGGTACGACTACTGCTTCTTGAGGTACAGCAAGGACAACTTTGTTGGCAAGCTCA GCTCTTCCTATGCTCTGTTTTACTACAATGTCGAGAACGTGACCGACCCGGATTTCTTCAACAATAAGCTTGGAGAGTTGGTGGATGGGATCCGATCACA AGCGGTGAAACCGCAGAGTAAAGGGATTGGGAAAGGTGAGACCAAGTTGTCATCTTTCATCACGCTCTATGCTCTGGCGCAGTGCACCAGGGATTTGGCG GCCATTAACTGTGCTCAGTGCCTTTCGATCGCCGTTGGAAACTTCCCGACTATTTGTAACAATAAGAAAGGGTGTAGGGCTCTGTATGACGGCTGCTATG TTCGATATGAGCTCTACCCTTTCTTTTTCCCTCTCGATTCCAGCCATTCTACTATGGCTGTTTCTGATGCTGCTACTTCAGTTTCCGTGGTCATTCGGTC TTAG
AA sequence Show only first row Show all	>Lus10038227 pacid=23158317 polypeptide=Lus10038227 locus=Lus10038227.g ID=Lus10038227.BGIv1.0 annot-version=v1.0 MNMMKINTLPAAISFFLLLPILLVTATDPLGEFCNKDTTKLNPQSSSNLQKLLSQLVSRTTSSGYSVASSGTGSDQLHGLAQCRGDVSTGDCSTCIQEAA AEITRRCTKLPDARIWYDYCFLRYSKDNFVGKLSSSYALFYYNVENVTDPDFFNNKLGELVDGIRSQAVKPQSKGIGKGETKLSSFITLYALAQCTRDLA AINCAQCLSIAVGNFPTICNNKKGCRALYDGCYVRYELYPFFFPLDSSHSTMAVSDAATSVSVVIRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	0	1
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	1.0	0.9461
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	1.4	0.9385
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	1.7	0.9380
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	2.0	0.9369
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	2.6	0.9104
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	3.2	0.9247
					Lus10030114 [exp]	3.2	0.9035
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	3.5	0.9136
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	4.0	0.9102
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	4.2	0.9082

Compare expression of checked genes

Lus10038227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.