Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07420 345 / 1e-114 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT5G56680 324 / 3e-107 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 309 / 2e-101 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 268 / 1e-85 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G68420 79 / 2e-18 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G26870 77 / 1e-15 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 73 / 4e-14 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025874 [exp] 585 / 0 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10032704 [exp] 325 / 2e-107 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 253 / 7e-80 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10007470 [exp] 239 / 9e-74 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 235 / 1e-73 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10008180 [exp] 196 / 4e-62 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 78 / 1e-15 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 76 / 5e-15 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 51 / 1e-07 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249700 [exp] 385 / 2e-129 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G153900 [exp] 327 / 2e-108 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 326 / 5e-108 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 273 / 2e-87 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.007G129800 [exp] 271 / 1e-86 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G085400 [exp] 68 / 2e-12 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Lus10038228 pacid=23158263 polypeptide=Lus10038228 locus=Lus10038228.g ID=Lus10038228.BGIv1.0 annot-version=v1.0 ATGAATTGCCCCAGCTCGGAAGAATTCCAAAACCTTGCCCTCTACACTTCGCTTCCCTTCATTCTTTCTCAAAATCAATCCCTTTCCTCTTCGGACCAAT TAGCTGCCCAGTTGGAGGCCGAAGAGCAGAGGCAACAACAGCTGAAGTCCGCATTTTCAACGCCGACTACCAAGATTAACAACGCGGCGGATGTTTACTT CTCGCGGCAGGTTTATCTGACAGTATCTGGCCGGCTTCACCTTGAAAGCTACGCTTGTGCTCTGGGAAACGTCTATGCGTTTGGGCCCAGGTTTCGGGCG GATCGAAACGTGAATCAGAAGCTGCATGCGGCTGAGATGTGGATGTTTGAAGTCGAGATGGCTTTTTCGCAGCTGATGGATGCGATGAACTGTGCAGAGA ACCATTTCAAGTTCATGTGCAAATGGATCCTGGAGAATTGTACTGGAGACATGGGGTTTATCTCGAATCGAATTGATAAAAACTGCATCGGCCGTCTTGA GGGGATGATCGCTACTTCATTTGAAAGGATCACATACATGGATGCAGTTGAAATTCTGAAAAAGGTGACGGACAAACGATTCGAGACAAGCCTGGTATGG GGTATTGATCTCACATCAGAACATTTAAGTTATTTGACAGATGAAATGTTTAAGAAGCCAGTGATAGTGTACAATCACCCAAGAGATGTCAGGCCATTCT ACGCACGCTTAAATGATGACTTGCAAACAGTAGCGACTTTCGACATGGTCGTCCCCAAGGTTGGGAAACTGATCACAGGTAGTCAAAACGAGGAGCGGAT TCACATGGTTGAAACAAGGATTAAGGAGCTGGGCTTGCCAACTGCAGAATACGAATGGTACTTGGATCTTAGGAGGCACGGTACAGTGAAGCATTCTGGT TTCAGCCTTGCCTTTGATCTCATGGTTCTCTTCGTTACTAGTCTCCCAGATGTCAGAGATGCTATCCCTTTCCCCAGAAGCATTGGCAAAGCCAACAACT AA
AA sequence Show only first row Show all	>Lus10038228 pacid=23158263 polypeptide=Lus10038228 locus=Lus10038228.g ID=Lus10038228.BGIv1.0 annot-version=v1.0 MNCPSSEEFQNLALYTSLPFILSQNQSLSSSDQLAAQLEAEEQRQQQLKSAFSTPTTKINNAADVYFSRQVYLTVSGRLHLESYACALGNVYAFGPRFRA DRNVNQKLHAAEMWMFEVEMAFSQLMDAMNCAENHFKFMCKWILENCTGDMGFISNRIDKNCIGRLEGMIATSFERITYMDAVEILKKVTDKRFETSLVW GIDLTSEHLSYLTDEMFKKPVIVYNHPRDVRPFYARLNDDLQTVATFDMVVPKVGKLITGSQNEERIHMVETRIKELGLPTAEYEWYLDLRRHGTVKHSG FSLAFDLMVLFVTSLPDVRDAIPFPRSIGKANN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	3.6	0.8492
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020526 [exp]	4.0	0.8371
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	7.7	0.7978
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	11.4	0.8312
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	12.7	0.8024
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	14.1	0.8123
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	14.1	0.8024
					Lus10029758 [exp]	14.8	0.7744
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	15.3	0.8031
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	15.6	0.8259

Compare expression of checked genes

Lus10038228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.