Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025871 [exp] 86 / 5e-23 AT3G07425 50 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250100 [exp] 37 / 0.0002 AT3G07425 49 / 6e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038229 pacid=23158439 polypeptide=Lus10038229 locus=Lus10038229.g ID=Lus10038229.BGIv1.0 annot-version=v1.0 ATGGTGCCAAGCTCCAATTCGCTAGTGAGATGGTGCCAGCCGCAGCGGCGGTCAATGAGGCGGCGGAGGGGTAGCACTATAAGGCTGGGGAGCCGACGGC GGCGTGGGTTCTTGCTGGGGACCAGGCGGACGGTTCGATGGGGTTTGGTGGTGGCGGCTCCTCTAAGAATGCTCAAGAAAATGATGATGAAATTAGCTTC TCCAACTGCTAGTACTAGTACTGCTGCTGCTGGTTATGCTGATTTAGAGGCTTACTATCGTAATTTTCCATTTTTACGTCCTCAGATATTTCCCCTTTGT TGA
AA sequence Show only first row Show all	>Lus10038229 pacid=23158439 polypeptide=Lus10038229 locus=Lus10038229.g ID=Lus10038229.BGIv1.0 annot-version=v1.0 MVPSSNSLVRWCQPQRRSMRRRRGSTIRLGSRRRRGFLLGTRRTVRWGLVVAAPLRMLKKMMMKLASPTASTSTAAAGYADLEAYYRNFPFLRPQIFPLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07425			unknown protein		Lus10038229 [exp]	0	1
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	12.0	0.8466
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	16.9	0.8285
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10041144 [exp]	17.3	0.8174
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10003374 [exp]	17.4	0.8414
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	26.5	0.8380
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	27.9	0.8155
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	37.5	0.8130
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	41.4	0.7929
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	52.5	0.8217
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	57.0	0.8183

Compare expression of checked genes

Lus10038229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.