Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26470 377 / 9e-129 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025870 [exp] 362 / 8e-127 AT2G26470 247 / 4e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250400 [exp] 416 / 6e-146 AT2G26470 389 / 6e-133 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02586 [flax] [poplar] SRAP SOS response associated peptidase (SRAP)
Representative CDS sequence Show only first row Show all	>Lus10038230 pacid=23158202 polypeptide=Lus10038230 locus=Lus10038230.g ID=Lus10038230.BGIv1.0 annot-version=v1.0 ATGTGTGGTAGAACTCGCTGTACTCTTGGAGCAGCTGACGTTCCTAGGGCTTGCCACCGTACTGGCGGCCCCTCGCAGATGGTTGATGTTGATCGGTACA GGCCGTCGTATAATGTTGGACCGGGGTGGAATATGCCGGTTGTGCGCCGGGACGACGGGGCGGATGGCGGTTACTCTGTTCACTGCATGAAGTGGGGGTT AATTCCTAGTTTCGCCAAAAAAAACGAGAAGCCTGACTTCTTCAGGATGTTCAATGCTCGATCAGAGTCGGTAGCTGAGAAGCCTTCTTTCCGTCGTTTA CTTCCAAAAAACCGGTGTCTTGTAGCTGTGGAAGGATTCTACGAGTGGAAGAAAGATGGCTCTAAAAAGCAGCCTTACTACGTCCATTTCAGGGACGGTC GACCACTTGTGTTCGCTGCACTTTATGATTCTTGGACAAACTCTGAAGGCGAGACACTCTACACATTCACCATTCTTACAACATCATCATCATCAAAGCT CAACTGGCTGCATGATAGAATGCCTGTCATTTTGGGGGATAAAGATGTTACTGACACTTGGCTCAATTATGATCCCTCAACATATGATTCGTTGCTCAAG CCTTACGAACATTCGGATTTGATATGGCACCCGGTGACACCTGCTATGGGTAAATTCTCATTTGACGGGCCAGAGTGTATCAAAGAGATACAGTTAAAGA AAGAGGAGAAAGGTAACATATCAAAATTCTTTGTGAAGAAAGAGGTCAAACAACAAGAAGAAGCTAGTAAGCTTGATGATCCCGCAAAGATGGAAAAGGG AGAAAGCGTGAAAGAGGAAGTTGAAGTTGAAGTTGGCAAGGAAGAGGACATGATAAAACCAGGCGTTGCAGAGATAGACGAGAAATCAAAGGTGAAGCGG CGGGAATTGGAGGACACTGGAGCTGAATGGGCAGCTGTTTGCAAGCGGGTCGGGGAAGGAAGTCCGGCTGGGAAGAAAGCTAAGGTGAAAAATGATGGCG ATAATAAACAACCAACCCTTCTTTCCTACTTCGGGAAAAAGTAA
AA sequence Show only first row Show all	>Lus10038230 pacid=23158202 polypeptide=Lus10038230 locus=Lus10038230.g ID=Lus10038230.BGIv1.0 annot-version=v1.0 MCGRTRCTLGAADVPRACHRTGGPSQMVDVDRYRPSYNVGPGWNMPVVRRDDGADGGYSVHCMKWGLIPSFAKKNEKPDFFRMFNARSESVAEKPSFRRL LPKNRCLVAVEGFYEWKKDGSKKQPYYVHFRDGRPLVFAALYDSWTNSEGETLYTFTILTTSSSSKLNWLHDRMPVILGDKDVTDTWLNYDPSTYDSLLK PYEHSDLIWHPVTPAMGKFSFDGPECIKEIQLKKEEKGNISKFFVKKEVKQQEEASKLDDPAKMEKGESVKEEVEVEVGKEEDMIKPGVAEIDEKSKVKR RELEDTGAEWAAVCKRVGEGSPAGKKAKVKNDGDNKQPTLLSYFGKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26470			unknown protein		Lus10038230 [exp]	0	1
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	1.7	0.8836
AT1G26750			unknown protein		Lus10031376 [exp]	2.0	0.8741
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	4.9	0.8317
AT3G08880			unknown protein		Lus10012504 [exp]	5.0	0.8326
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	5.3	0.8468
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	5.5	0.8648
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	6.2	0.7762
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	6.6	0.8197
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	7.5	0.8257
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	8.4	0.8093

Compare expression of checked genes

Lus10038230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.