Plant FIBer expression Database

Lus10038231 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48520 921 / 0 AtAUG3 augmin 3, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025869
[exp]
1170 / 0 AT5G48520 876 / 0.0 augmin 3, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G191100
[exp]
978 / 0 AT5G48520 993 / 0.0 augmin 3, unknown protein
PFAM info
Representative CDS sequence
>Lus10038231 pacid=23158512 polypeptide=Lus10038231 locus=Lus10038231.g ID=Lus10038231.BGIv1.0 annot-version=v1.0
ATGAGCGGAGCTCGATTGTGCAGATTGCTGGGTGAATTGGGGTACGAAGATGCGCAGTCATTAGACCCTGATAGCTTCGAATGGCCCTTCCAATACGACG
ATGCTCGCCCCATTCTCGACTGGATCTGCTCCAGCCTCCGCCCTTCCAACGTCCTCTCCCTCCCTGAGCTCTCACAGTATGAGCAGTTTTTGCAAGAAGG
CAAGTTATTGGAGGGTGGTGACTTGGACTCTGCTTATGATAGTATTTCAGCATTTTCCTCTAGTCGGGACAACCAAGAGGCAGTTTTTGGAGCTGAAGAA
AGTTTAAAAGATATACGGGATGCAACTTTGGCATATAGGACTGAAGCCCTAGAGTTGCAGAGGCAACTCAGCCATCTGCAATCTCAATTCAACATGCTTA
CTGACCAGGCTTCGACTTTGGTACAAGGAAGGCGTGCTCGAGTGGCTGCAACATCTGCAGTAAACGGACACCTTGCGGCACTAGATGATAGTTTGTCAGG
AAGAAACTTGCGTATGAATGAAGTTCTTGAGAGGATTGCTTCTGCAGCTGAAGAGTTGGCTAATTATCATTCTGGGGAAGGCAGGTTTTTCAATTTTGTT
CGACCACATGTCTCTGATTTCGGAATCAATAAGAATACAGAGGATGGGATCTACTTGGCATACTCTGATTTCCACCCGTACTTGCTTGGAGATTCTTCTT
ACATGAGGGAAATAAACCAGTGGTTTTCCAAACAACTGGACACGGGTCCTTTTCGACTAGTTGCTGAAGAGGGAAAGTCAAAATGTTCTTGGGTCAGTCT
GGATGACATATCAAACGTTATTGTAAGAGATATAGAAATATCCCATCATCAACGAGTATCTGAGCTCCAGAGGCTTCGGTCTATATTTGGAACAAGTGAA
AGACAATGGGTTGAAGCGCAGGTTGAAAATGCAAAACAGCAAGCTGTTCTTGTTACTTTAAAATCTCAGGTAGCATCAGATGAAGCACACATTCATCTTG
ACCTTCATTCTCTCAGGAGGAAGCATTCAGAACTGGTGACAGAACTCACAAATCTTCATCACAAGGAAGAAAAGTTGCTATCTGAGACCATTCCAGAACT
TTGTTGGGAGTTGGCTCAATTGCAAGATACATATATTTTGCAAGGTGACTATGATTTGAAAGTCATGAGACAAGAACACTATATCACCAGGCAGAAAACG
GTACTTTATGACATTACTTTTCTTCTTAAATTGAAGTATCTTAGCGAGTTCATAATGCATCTTATAAATCAACTAGCAAGGCATCAGTTCCTCAAATTAG
CTTGTCAGGTTGAAAAGAAGAGCATGCTTGGAGCATATTCATTACTCAAAGTCATTGAGTCAGAACTTCAAGGCTACCTCTCAGCAACGCAGGGCCGAGT
GGGTCGTTACTTGGCACTGATTCAAGCTGCATCTGATATTCAAGAACAAGGCGCAGTAGATGACCGGGATGCTCTGCTGCATGGTATTAGGGACCTTCTG
AGCATTCATTCATATGCTCAAGCTGGATTGTCAGGATATGTATCAGCTCCTGGTATCGTGCAGCAAATTGCTGCTCTTCATTCGGACTTGATGACGCTGC
AGTCTGATCTTGATAATTCCCTCCCAGAGGATAGAAACAGATGCATCAATGAGCTGTGCACACTAATTCAAAGTATGCAGCAGCTGCTGTTTGCATCGTC
AACCACTGCGCAGCCTATTCTAACCCCTCGGGCATTGATGGAGGAGCTTGATGGCATGGGGAAGAAAGATGTCGAACTAGCTGCTGCAGTTGAAGAAGTT
AACCTTGAACACGTCAAGAAAAATGAGATCGTAAAGCATCATTCACATGGAGTGGGGATTCAAAGGCAAGTATTTGTGGACTTCTTCTGCAGTCCTGACC
GTTTGAGGGAACTGGTTCAAGATCTAAGGGCTCGTTTTAGAGCCATGCAAGTACGATAG
AA sequence
>Lus10038231 pacid=23158512 polypeptide=Lus10038231 locus=Lus10038231.g ID=Lus10038231.BGIv1.0 annot-version=v1.0
MSGARLCRLLGELGYEDAQSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLPELSQYEQFLQEGKLLEGGDLDSAYDSISAFSSSRDNQEAVFGAEE
SLKDIRDATLAYRTEALELQRQLSHLQSQFNMLTDQASTLVQGRRARVAATSAVNGHLAALDDSLSGRNLRMNEVLERIASAAEELANYHSGEGRFFNFV
RPHVSDFGINKNTEDGIYLAYSDFHPYLLGDSSYMREINQWFSKQLDTGPFRLVAEEGKSKCSWVSLDDISNVIVRDIEISHHQRVSELQRLRSIFGTSE
RQWVEAQVENAKQQAVLVTLKSQVASDEAHIHLDLHSLRRKHSELVTELTNLHHKEEKLLSETIPELCWELAQLQDTYILQGDYDLKVMRQEHYITRQKT
VLYDITFLLKLKYLSEFIMHLINQLARHQFLKLACQVEKKSMLGAYSLLKVIESELQGYLSATQGRVGRYLALIQAASDIQEQGAVDDRDALLHGIRDLL
SIHSYAQAGLSGYVSAPGIVQQIAALHSDLMTLQSDLDNSLPEDRNRCINELCTLIQSMQQLLFASSTTAQPILTPRALMEELDGMGKKDVELAAAVEEV
NLEHVKKNEIVKHHSHGVGIQRQVFVDFFCSPDRLRELVQDLRARFRAMQVR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G48520 AtAUG3 augmin 3, unknown protein Lus10038231
[exp]
0 1
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Lus10042003
[exp]
4.9 0.8512
AT4G23460 Adaptin family protein (.1) Lus10028775
[exp]
7.7 0.8712
AT1G29370 Kinase-related protein of unkn... Lus10015262
[exp]
9.2 0.8787
AT3G53760 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN ... Lus10042807
[exp]
11.2 0.8590
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10007887
[exp]
12.2 0.8655
AT4G28190 ULT ULT1 ULTRAPETALA1, Developmental re... Lus10018560
[exp]
17.4 0.8480
AT4G21520 Transducin/WD40 repeat-like su... Lus10011253
[exp]
26.9 0.8658
AT2G42520 P-loop containing nucleoside t... Lus10029337
[exp]
31.3 0.8543
AT1G71860 ATPTP1, PTP1 protein tyrosine phosphatase 1... Lus10006053
[exp]
32.9 0.8604
AT3G25800 PP2AA2, PR65, P... protein phosphatase 2A subuni... Lus10041472
[exp]
33.8 0.8446

Lus10038231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.