Plant FIBer expression Database

Lus10038234 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48470 504 / 7e-179 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025865
[exp]
633 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G251400
[exp]
499 / 3e-177 AT5G48470 529 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10038234 pacid=23158191 polypeptide=Lus10038234 locus=Lus10038234.g ID=Lus10038234.BGIv1.0 annot-version=v1.0
ATGTTGTCACCATCAACATTTGAGTTCCGTTTCCAACCCTCTACACCAAGCACGACAATACTTGCAAACCCAATCATCCCACTCCAACCCCAATCTCTCC
CATCTCCTTTCTTTGTTTCATCCACACCTTCCCACCATAAACAGTGCCGTCTGAAGCAACGGCAGAGAAAGCAGCTGCTGCTGCTGCCGGCGAAGTGCGC
CAGTAATGAGGAGGCAGAAAGGTACATGGAGCAAGAACTGGGGATACCAACCACTAGAACCAGGACCAAAGAAGAGTGGAATGACAAGCCCGACAGTTCT
GGGTACGAAGCTCTGCTCAGGGGCGGTGACCAAGTCACTTCCGTCCTTGAGGAGATGATTACCCTTTTGAAAGACATGAACATGGATGAAGCATCTGAGA
AAGTGGCAGTTGAGTTAGCTGCACAAGGAGTGATAGGGAAAAGAGTGGATGAGATGGAGTCTGGGTTTATGATGGCCTTAGATTATATGATTGACCTTGC
TGGCAAAGACCAAGATGATAAGCGAAAGGAACTGTTGGGAGTTATCAAGGAAACTGTGTTGGGACATCTGACTAGAAAATGCCCCCCACATGTTCAAGTG
ATTGGTTTGCTTTGTAGAACTCCAGACAAGGATAGCAGGCATGAGCTATTACGTAGAGTGGCTGCTGGTGGCGGTGCCTTTGAAGGAAAGGAGGGAACAA
AAGTTCATCTCCCTGGAGCAAATTTAAATGAAATTGCTAACCAAGCGGATGACATACTTGAGACGATGGAAACTCGACCTGTGATTCCTGATCGCAAGCT
ACTTGCAAGGCTTGTCTTGATCAGAGAGGAAGCCAGGGAGATGATGGGAGGTGGAATACTGGATGAAAGAAATGACCGTGGATTTAGCACTCTTCCTGAA
TCTGAGGTGAACTTCTTAACCAAACTTGTTGCTCTGAGACCTGGGAGAACTCTACGCGACATGATAAAGAATGTGATGCTGGGAAAGGATGAAGGTACAG
AAGATACCACTGAGGAGGGAGGCAGCAGTAATGAAAGGAATTTAAAAGGAATTGCGGGAAGGGGAAGTGTCAGTGGGCGAAAACCACTTCCTGTACGCCC
TGGCATCTTTCTTGAGACTGTCACCAAGGTACTTGGTGGCATATACTCCGGAAATGTCTCGGGCATTACAGCACAACATCTAGAATGGGTTCACCAAAAC
ACGCTTGAAATCCTTGAAGAGATTGCATTCTAG
AA sequence
>Lus10038234 pacid=23158191 polypeptide=Lus10038234 locus=Lus10038234.g ID=Lus10038234.BGIv1.0 annot-version=v1.0
MLSPSTFEFRFQPSTPSTTILANPIIPLQPQSLPSPFFVSSTPSHHKQCRLKQRQRKQLLLLPAKCASNEEAERYMEQELGIPTTRTRTKEEWNDKPDSS
GYEALLRGGDQVTSVLEEMITLLKDMNMDEASEKVAVELAAQGVIGKRVDEMESGFMMALDYMIDLAGKDQDDKRKELLGVIKETVLGHLTRKCPPHVQV
IGLLCRTPDKDSRHELLRRVAAGGGAFEGKEGTKVHLPGANLNEIANQADDILETMETRPVIPDRKLLARLVLIREEAREMMGGGILDERNDRGFSTLPE
SEVNFLTKLVALRPGRTLRDMIKNVMLGKDEGTEDTTEEGGSSNERNLKGIAGRGSVSGRKPLPVRPGIFLETVTKVLGGIYSGNVSGITAQHLEWVHQN
TLEILEEIAF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G48470 unknown protein Lus10038234
[exp]
0 1
AT1G48570 zinc finger (Ran-binding) fami... Lus10009049
[exp]
4.2 0.8361
AT1G09830 Glycinamide ribonucleotide (GA... Lus10005561
[exp]
10.4 0.7414
AT1G80880 Tetratricopeptide repeat (TPR)... Lus10041669
[exp]
11.0 0.7398
AT4G33680 AGD2 ABERRANT GROWTH AND DEATH 2, P... Lus10010748
[exp]
15.4 0.7703
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Lus10002422
[exp]
18.2 0.7512
AT1G05730 Eukaryotic protein of unknown ... Lus10027051
[exp]
22.5 0.7293
AT2G40300 ATFER4 ferritin 4 (.1) Lus10017433
[exp]
24.0 0.6964
AT4G19191 Tetratricopeptide repeat (TPR)... Lus10031028
[exp]
26.5 0.7143
AT1G07615 GTP-binding protein Obg/CgtA (... Lus10016548
[exp]
26.7 0.7264
AT3G49080 Ribosomal protein S5 domain 2-... Lus10038852
[exp]
27.5 0.6942

Lus10038234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.