Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48460 1056 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G35700 887 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT4G26700 872 / 0 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G55400 867 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT2G04750 837 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025865 [exp] 1201 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10016580 [exp] 867 / 0 AT4G26700 986 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10014894 [exp] 827 / 0 AT4G26700 946 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10012361 [exp] 737 / 0 AT5G35700 843 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10006407 [exp] 723 / 0 AT5G35700 842 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251600 [exp] 1185 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Potri.001G360100 [exp] 921 / 0 AT4G26700 1019 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.011G086500 [exp] 919 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.014G163100 [exp] 901 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10038235 pacid=23158498 polypeptide=Lus10038235 locus=Lus10038235.g ID=Lus10038235.BGIv1.0 annot-version=v1.0 ATGTCGGCCTATGTGGGAGTTCTCGTCTCAGATCCATGGCTCCAGAACCAGTTCACTCAGGTGGAGCTCCGCAGCTTAAAATCTCACTTTATTAGCATGA GAAGAGAGAGTGGGAAGTTGACGCTCCGGGACATGGCGTCGCGGATGTCCAGATTGAAAGTTGTGGGAGAGAATTTGACGGAGGCAGAGCGAGCTTCTTG TATTCAGGATTTGTATCAGAATCTCGACGATGAGGTCGATTTCGAGTTCTTTCTCAAGGTGTATCTGAAGCTTCATGCACATGCAAGTGCCAGAACAGGA AGCGTGGCTAAGAACTCATCCGCATTCCTCAAAGCTGCCACCACCACGCTGCTTCACACCATCAGCGACCCAGAAAAGGCTTCTTATGTAGCCCACATTA ATAACTACTTAGCAGGGGATAACTTCTTGAAACAATACCTACCAATAGATCCTTCAACTAATGATCTTTTCGAGATTGTCAAGGATGGTGTCCTTCTTTG TAAGCTTATCAATGTGGCCGTTCCTGGTACAATTGATGAAAGGGCCATTAATACCAAGAGAGTTCTCAATCCGTGGGAAAGAAATGAAAATCATACACTC TGCCTCAACTCTTGCAAGGCTATTGGTTGTACTGTTGTCAATATTGGCACCCAAGATTTCATTGAAGGAAGAAATCTACTTGATGACCGTGAGTCCGTGT TAACAATGTCTTGTTCCAATTTTCAGCGCCATCTTGTGCTTGGATTGATTTCTCAAATTATCAAGATACAACTTTTGGCAGACCTCAACCTTAAGAAAAC ACCCCAGTTATTGGAGTTGGTCCATGACAGTCAGGAAGTAGAAGAGTTGATGAGTCTACCGCCAGAGAAGATCTTATTGAGATGGATGAACTTTCAACTG AAGAAATCTCCATACAAGAAAACAGTCTCAAACTTCTCTTCTGATGTGAAGGATGCAGAGGCTTATGCCCACCTTCTAAATATTCTTGCTCCTGAGTGTA GTAATCCATCCACTCTAACAGTCAAAGATTATTTGGCAAGAGCAAAATTGGTCCTTGAACATGCTGACAGAATGGGGTGCAAGAGATACTTAACGGCAAA AGATATCGTTGAAGGTTCTCCAAATCTTAATCTAGCATTCGTTGCCCATATTTTTCAGCATAGGAATGGGCTATCAACCGAAAAACCGCAGATAAGTTTC CTTGAGACTTTAACCGATGACACCCAAATCTCCAGAGAAGAGCGGGCATTCAGATTGTGGATGAACAGTGTGGGAAACTCTAGTTATATAGACAACGTCT TTGAAGATCTTAGGAACGGGTGGCTTCTTCTTGAGACGCTTGATAAGGTGTCCCCGGGAATTGTAAACTGGAGGATTGCAAATAAACCGCCGATCAAATT GCCATTCAGAAAGGTGGAGAACTGCAACCAGGTCGTGAAAATAGGGAAACAACTAAAATTCTCCCTCGTTAACATTGCTGGAAATGACATCGTACAAGGA AACAAGAAATTGATACTAGCTTACTTGTGGCAGTTGATGAGGTACAATATCCTCCAACTTCTCAAAAACTTGAGATTCCATTCCCACGGAAAAGAAATCA ACGACGTTGATATCTTACAATGGGCCAACACCACAGTCAGCAGCTCTGGTGGCCAAACTCGCATGAATAGCTTTAAGGATAAAAGCTTGTCAGATGGCGT ATTCTTCCTTGAGTTGCTTAGTGCGGTTCAGCCCAGAGCAGTAAATTGGAGTCTCGTAACTAAAGGCATAACAGAGGAAGAGAAAAAGATGAACGCCACA TATATCATCAGCATAGCCAGAAAGCTAGGATGTTCGATATTTCTGCTTCCGGAGGACTTAACAGAGGTGAATCAGAAGATGATCCTGACACTGACGGCCA GCATTATGTATTGGCAATTAAAGCAACCTACGGAGGATAAACCTGCAGCAGCGGGGAGTTCAGATAGTGAGAGCCTTTCGAACTCGACAACGGATGATTC TGCCTCCGAGTCATCCTCGGAAGAAAATCCCAATTTATGA
AA sequence Show only first row Show all	>Lus10038235 pacid=23158498 polypeptide=Lus10038235 locus=Lus10038235.g ID=Lus10038235.BGIv1.0 annot-version=v1.0 MSAYVGVLVSDPWLQNQFTQVELRSLKSHFISMRRESGKLTLRDMASRMSRLKVVGENLTEAERASCIQDLYQNLDDEVDFEFFLKVYLKLHAHASARTG SVAKNSSAFLKAATTTLLHTISDPEKASYVAHINNYLAGDNFLKQYLPIDPSTNDLFEIVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTL CLNSCKAIGCTVVNIGTQDFIEGRNLLDDRESVLTMSCSNFQRHLVLGLISQIIKIQLLADLNLKKTPQLLELVHDSQEVEELMSLPPEKILLRWMNFQL KKSPYKKTVSNFSSDVKDAEAYAHLLNILAPECSNPSTLTVKDYLARAKLVLEHADRMGCKRYLTAKDIVEGSPNLNLAFVAHIFQHRNGLSTEKPQISF LETLTDDTQISREERAFRLWMNSVGNSSYIDNVFEDLRNGWLLLETLDKVSPGIVNWRIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQG NKKLILAYLWQLMRYNILQLLKNLRFHSHGKEINDVDILQWANTTVSSSGGQTRMNSFKDKSLSDGVFFLELLSAVQPRAVNWSLVTKGITEEEKKMNAT YIISIARKLGCSIFLLPEDLTEVNQKMILTLTASIMYWQLKQPTEDKPAAAGSSDSESLSNSTTDDSASESSSEENPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	0	1
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	2.4	0.8822
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	2.8	0.8498
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	4.2	0.8326
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	5.5	0.8570
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	7.5	0.8401
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	8.1	0.8443
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	8.3	0.8508
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	11.0	0.8297
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	11.6	0.8470
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	12.0	0.8350

Compare expression of checked genes

Lus10038235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.