Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 798 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 795 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 770 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025863 [exp] 894 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 886 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 870 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 842 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 838 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10042947 [exp] 811 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 810 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028313 [exp] 198 / 3e-62 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 174 / 4e-51 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 808 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 805 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 804 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10038236 pacid=23158252 polypeptide=Lus10038236 locus=Lus10038236.g ID=Lus10038236.BGIv1.0 annot-version=v1.0 ATGGCAGACAGCGAGGACAAGAACATTGAGATTTGGAAGATAAAGAAGCTTATAAAATCACTGGAAGCTGCTAGGGGAAATGGAACGAGCATGATTTCAC TAGTCATACCTCCTCGTGATCAGATATCACGTATTGCTAAGATGCTTGGTGATGAGTATGGAACTGCTTCGAATATTAAGAGCAGGGTCAATCGTCAGTC TGTTCTTGGTGCTATCACATCTGCTCAGCAGAGGCTTAAACTCTATAACAGGGTTCCTACGAATGGACTTGTGTTGTACACCGGCACTATTTTGACTGAT GATGGGAAGGAAAAGAAAGTGACTATGGACTTTGAGCCTTTTAAACCAATCAATTCATCTCTCTACCTTTGTGACAACAAGTTCCATACTGAAGCATTGA ATGAACTATTGGAGTCTGATGACAAGTTTGGTTTCATCGTCATGGATGGTAATGGCACCTTGTTTGGAACACTAAGTGGGAACACCAGGGAAATTCTGCA TAAGTTCTCGGTTGACTTGCCTAAGAAACACGGGAGAGGAGGACAGTCGGCGCTTCGTTTTGCTAGACTCCGAATGGAGAAGCGCCACAATTATGTGAGG AAGACAGCTGAACTTGCTACACAGTTTTATATAGACCCATCCACCAGCCAGCCGAATGTATCTGGCCTAATTCTTGCTGGATCTGCTGACTTTAAGACTG AGCTGGGTCAGTCTGATATGTTCGATGCTCGACTTGGAGCGAAGATTCTGAATGTTGTGGATGTGTCCTATGGCGGAGAAAACGGATTCAACCAGGCAAT TGAGCTTTCTGCCGAGATTTTGTCCAATGTGAAGTTTATCCAGGAGAAGAAGCTGATAGGAAAGTACTTTGAAGAGATTAGTCAAGATACGGGGAAATAT GTATTTGGCGTGGATGATACATTGTCAGCTTTGGATATGGGTGCAGTTGAGATTCTGATTGTGTGGGAGAATCTAGAGATCAACAGGTATGAATTGAAGA ACAGTGCCAACGGTGAGATTGTTGTCAAACATTTTACCAAAGAGCAAGAGACCAATGAAAGCAACTTTAGGGATTCGTCCACTTCAGCTGAACTGGAGGT TCAGGACAAGATGCCTCTGCTCGAATGGTTTGCTAACGAGTACAAGCGATTTGGTTGCACTCTTGAGTTTGTTACCAACAAATCACAGGAAGGGTCCCAA TTCTGCAGAGGGTTTGGTGGTATTGGTGGCATTCTGCGTTACCAAGTCGACATGAGATCGTTTGATGATGTTTCCGATGACGGGGAAGGAGTTTACGATT CTGAATAG
AA sequence Show only first row Show all	>Lus10038236 pacid=23158252 polypeptide=Lus10038236 locus=Lus10038236.g ID=Lus10038236.BGIv1.0 annot-version=v1.0 MADSEDKNIEIWKIKKLIKSLEAARGNGTSMISLVIPPRDQISRIAKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPTNGLVLYTGTILTD DGKEKKVTMDFEPFKPINSSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREILHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVR KTAELATQFYIDPSTSQPNVSGLILAGSADFKTELGQSDMFDARLGAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKY VFGVDDTLSALDMGAVEILIVWENLEINRYELKNSANGEIVVKHFTKEQETNESNFRDSSTSAELEVQDKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQ FCRGFGGIGGILRYQVDMRSFDDVSDDGEGVYDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10038236 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	3.5	0.8736
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	6.5	0.8718
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	10.9	0.8722
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10014201 [exp]	16.3	0.8324
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	18.0	0.8363
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	18.3	0.8107
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	19.1	0.8541
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	19.6	0.8607
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	21.2	0.8387
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	22.5	0.8370

Compare expression of checked genes

Lus10038236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.