Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 149 / 4e-46 Protein of unknown function, DUF538 (.1) AT3G07460 143 / 1e-43 Protein of unknown function, DUF538 (.1.2) AT5G16380 124 / 8e-36 Protein of unknown function, DUF538 (.1) AT5G54530 105 / 9e-29 Protein of unknown function, DUF538 (.1) AT1G61667 102 / 1e-27 Protein of unknown function, DUF538 (.1) AT5G19860 92 / 1e-23 Protein of unknown function, DUF538 (.1) AT1G55265 84 / 1e-20 Protein of unknown function, DUF538 (.1) AT4G02360 79 / 1e-18 Protein of unknown function, DUF538 (.1) AT1G02813 68 / 1e-14 Protein of unknown function, DUF538 (.1) AT4G02370 66 / 9e-14 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025861 [exp] 296 / 9e-103 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 164 / 2e-51 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 164 / 3e-51 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 162 / 5e-51 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 145 / 2e-44 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 136 / 1e-40 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 137 / 2e-40 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 99 / 2e-26 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 97 / 2e-25 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238900 [exp] 182 / 1e-58 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 180 / 8e-58 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 102 / 1e-27 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 102 / 1e-27 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 96 / 3e-25 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 94 / 2e-24 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 93 / 4e-24 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 89 / 1e-22 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 87 / 6e-22 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 85 / 8e-21 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10038238 pacid=23158132 polypeptide=Lus10038238 locus=Lus10038238.g ID=Lus10038238.BGIv1.0 annot-version=v1.0 ATGTTCGTCCTGTTCTTCTTTCAAATAGCGAGAGGAGTGGTTAAGAGAAGAGCTAAGCTCCTTGACAGAATGGCTCTCGGTTCTCTTCTCTCTTTTCTTC TCTACATCACAGTCTCAATCCCTTGCGCCGTCTCGGATCAGGAGACTAATCACAGTTCAATCTACGATGTCTTCAAGGAGAAAGGGCTTCCGATGGGATT GCTACCAAAAGGAGTTCGGGATTTCAAAATTGAAGAGTCGTCAGGGCTATTTGAGGTTCATTTGGATCAAGCCTGCAATGCCAAGTTCGAGAACGAGCTG CATTACGACAGCAACGTCACGGGGAAGCTCAGCTACGGTCAGATCGAGGCCCTATCCGGAATCTCGGCCAAGGAGCTGTTCCTCTGGTTCCAGGTGAAGG CAATTCGGGTTGACGTTTCGGATGCGGGGCTTATTTGCTTTGACGTTGGGGTCGTGGTGAAGAAATTTTCTGTTTCCTTGTTCGAGGCTCCCAAGGATTG TGCTGCTGCAGCTGCTGATGAGGAGAGGGAGGAAGTCGAAACTGGGATATTTATTGAAGAAGCTGTGGCTACGGTTTGA
AA sequence Show only first row Show all	>Lus10038238 pacid=23158132 polypeptide=Lus10038238 locus=Lus10038238.g ID=Lus10038238.BGIv1.0 annot-version=v1.0 MFVLFFFQIARGVVKRRAKLLDRMALGSLLSFLLYITVSIPCAVSDQETNHSSIYDVFKEKGLPMGLLPKGVRDFKIEESSGLFEVHLDQACNAKFENEL HYDSNVTGKLSYGQIEALSGISAKELFLWFQVKAIRVDVSDAGLICFDVGVVVKKFSVSLFEAPKDCAAAAADEEREEVETGIFIEEAVATV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	3.2	0.7989
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	6.5	0.7454
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	7.3	0.7428
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	11.0	0.7817
AT1G29530			unknown protein		Lus10011974 [exp]	12.1	0.7447
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10026001 [exp]	14.5	0.6738
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10004339 [exp]	15.3	0.7232
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	16.7	0.7444
AT1G65295			unknown protein		Lus10026997 [exp]	17.9	0.7405
					Lus10035524 [exp]	19.5	0.7471

Compare expression of checked genes

Lus10038238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.