Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 690 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 650 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT5G09640 333 / 3e-109 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT3G12203 328 / 4e-108 SCPL17 serine carboxypeptidase-like 17 (.1) AT2G22990 328 / 8e-108 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT2G22980 316 / 3e-103 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4) AT1G73290 316 / 4e-103 SCPL5 serine carboxypeptidase-like 5 (.1) AT1G73300 313 / 3e-102 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73280 312 / 9e-102 SCPL3 serine carboxypeptidase-like 3 (.1) AT2G23010 310 / 4e-101 SCPL9 serine carboxypeptidase-like 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025859 [exp] 984 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 770 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 762 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 636 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 587 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 575 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 544 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 353 / 3e-117 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 342 / 4e-104 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 794 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 639 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.013G124900 [exp] 344 / 7e-114 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 344 / 1e-113 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 335 / 4e-110 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 334 / 1e-109 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 316 / 2e-103 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 316 / 2e-102 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 296 / 5e-95 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.018G103100 [exp] 280 / 9e-89 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10038240 pacid=23158421 polypeptide=Lus10038240 locus=Lus10038240.g ID=Lus10038240.BGIv1.0 annot-version=v1.0 ATGGCGCCTTTCTCATACATTTTAGTATTTGCCCTGCTGAGCTTTGGAGCGTTACTGGCTCACTCTGCTCCTGAAAATGCTCTCGTCACTCAGCTTCCTG GCTTCTCTGGCTCTTTCCCTTCCAAGCACTACTCTGGGTATGTAACGATCAACGAGGGCACTGGGAAGAAATTGTTCTACTACTTGGTCCAATCGGAGGG GAACCCATCAAAGGATCCTCTTGTGCTTTGGCTTAATGGTGGTCCTGGTTGCTCCAGCTTCGATGGATTCGTCTATGAGCATGATAAGACTGTTGAATTC ATCCACTGTTCAGGTCCTTTCAATTTTGAAAAGACTAAGGAAGGTCTACCCAAATTGCATCTGAACCCATATAGTTGGTCAAAGGTTTCAAGCGTTCTAT ACGTTGACTCTCCAGCTGGCGTTGGGTTTTCTTATGCGGAGAACACATCAGAATATGAGACTGGGGATCTAAAGACTGCCACAGATTCCCACGACTTTCT CTTAAAGTGGTTTGAGCTATACCCGGAGTTCCTATCAAACCCATTTTTCATTTCTGGAGAGTCATATGCTGGAGTTTATGTCCCAACTCTTGCTCATGAA GTTGCCAAAGGGATCGATGCTGGTGTTAAACCTGTTATTAATCTCAAGGGCTATATGGTTGGAAATGGAGTAACTGATGATGTGTTTGATGGAAATGCAC TTGTTCCATTTGCACATGGGATGGGCCTCATTTCAGATGACCTATATCAGGAGGTAACCCAAGAATGCAAGGGAAATTTCTACAACCCGCTGGAGGAAAA TTGTGAGCAGAAACTGATAGAAGTCGATAGGGAAGTTTCTGGTCTAAACATTTACGACATCCTAGAGCCTTGCTATCATGAAAGCAGTTCCAAAGATGCA TCAGATATGAAAATTAGACTGCCTTCCAGCTTCTTGGAACTAGGTTCAGGAACAGAGAGGCCTCTTCCTGTCCGGACAAGGATGTTTGGTCGTGCCTGGC CACTTCGAGCTAACGTTAGAGAAGGAATTGTTCCCAGTTGGCCACAACTCATGAGCACCAATAGCGTTCCATGCACTGACGATGAAGTTGCCACCGTATG GCTCAACAATGTAGCAGTTAGGAAAGCAATGAATGCCGAACCGAAAAGTGCATCTGGAGATTGGGAGCTATGTACGGGTAGAATTAGTTTCACACATGAT GCTGGTAGCATGATTAAGTACCACAGGAACTTGACACAGAAAGGCTATCGAGCACTGATTTACAGTGGGGATCATGATATGTGCGTTCCATTCACCGGAA GTGAAGCATGGACGAGATCAATGGGATACAAGGTCGTTGACAAATGGAGACCTTGGACTTCGAATGGACAAGTTTCTGGATTCACTCAAGGGTATGCTAA CAACCTCACGTTCCTAACCATCAAGGGTGCTGGCCACACTGTCCCAGAATATAAACCAAAAGAAGCACTGGACTTGTACAGCAGATTTCTGGCTGGTAAA GCAATGTGA
AA sequence Show only first row Show all	>Lus10038240 pacid=23158421 polypeptide=Lus10038240 locus=Lus10038240.g ID=Lus10038240.BGIv1.0 annot-version=v1.0 MAPFSYILVFALLSFGALLAHSAPENALVTQLPGFSGSFPSKHYSGYVTINEGTGKKLFYYLVQSEGNPSKDPLVLWLNGGPGCSSFDGFVYEHDKTVEF IHCSGPFNFEKTKEGLPKLHLNPYSWSKVSSVLYVDSPAGVGFSYAENTSEYETGDLKTATDSHDFLLKWFELYPEFLSNPFFISGESYAGVYVPTLAHE VAKGIDAGVKPVINLKGYMVGNGVTDDVFDGNALVPFAHGMGLISDDLYQEVTQECKGNFYNPLEENCEQKLIEVDREVSGLNIYDILEPCYHESSSKDA SDMKIRLPSSFLELGSGTERPLPVRTRMFGRAWPLRANVREGIVPSWPQLMSTNSVPCTDDEVATVWLNNVAVRKAMNAEPKSASGDWELCTGRISFTHD AGSMIKYHRNLTQKGYRALIYSGDHDMCVPFTGSEAWTRSMGYKVVDKWRPWTSNGQVSGFTQGYANNLTFLTIKGAGHTVPEYKPKEALDLYSRFLAGK AM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10038240 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	1.7	0.9386
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10032238 [exp]	5.7	0.9232
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	7.6	0.9274
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10024601 [exp]	9.5	0.9238
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	11.5	0.9057
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	17.9	0.9160
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	20.6	0.9036
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	22.0	0.9197
AT3G29185			Domain of unknown function (DU...		Lus10015378 [exp]	24.2	0.8877
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	24.2	0.9113

Compare expression of checked genes

Lus10038240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.