Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48440 486 / 2e-169 FAD-dependent oxidoreductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025858 [exp] 905 / 0 AT5G48440 506 / 3e-177 FAD-dependent oxidoreductase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018300 [exp] 578 / 0 AT5G48440 531 / 0.0 FAD-dependent oxidoreductase family protein (.1.2) Potri.014G177300 [exp] 536 / 0 AT5G48440 511 / 2e-179 FAD-dependent oxidoreductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10038241 pacid=23158251 polypeptide=Lus10038241 locus=Lus10038241.g ID=Lus10038241.BGIv1.0 annot-version=v1.0 ATGGCTTCGTCTCTCTCGTTTCTCTCCTGGACAGCTTCTTCTCCCTGCTACCGCGACCCTATTTCTTTTCAACGCAGTTTCCCTACCTTGCTCAACAGCT GTACGGAATCCGCCTTATTCAGCTCCAAACTGCCCGCCACACCCCTTTCCTGCTCCTCGACGCCGCACCACCTCCGTTGCCGGGTTTTACATGCGGAAAG CGCTACTTCCGCTGCTTTTCAAACCTTCGATGTCGTCGTCATTGGGGCCGGAATAATCGGATTGACGATCGCTCGCCAGCTCTTGATTAGCTCCGACCTC TCCGTCGCCGTCGTTGATAAAGCTGTTCCGTGCTCCGGTGCTGCCGGCGCAGGGCAGGGTTACCTGTGGAAGGTGCACCTTACGCCTGAGGATGAGACAT GGGAGCTCGTAACCAGAAGCCATCAACTGTGGGAGATGTTTTCCGAGAGTGTGAGTGATCAAGGCTTGAGTCCTATCGACGAGCTCGGCTGGAAGAGGAC TGGAAGTTTGTTAGTTGGTAGAACCCTTAAAGAGGCAGAGATGTTGAAAAGGAAGGTGAAACAGCTGTCTGCAGCTGGGGTGAAAGCTGAGTACCTATCT AGTTATGAGTTAAGTATTGAGGAACCTGACCTAGTAGTTGGAGAGGATGGCGGGGCTGCTTTTCTACCAGATGATTGTCAACTGGATGCATATCGTACCG TCTCGTACATACAAAAGGCTAATAGAGAATTTGCATCGGAAGGGAGATACGCAGAATTCTTTCATGAGCAAGTGACAGGCTTGCTGAGCTCTAGTGGAAG TGGAGAGATTGATGGTGTTCAGATCTCAAGTGGTGCATTGATCAGTAAGAAGGCTATTATAGTTGCAGCTGGTTCATGGACTGGCTCTTTGACCCATGAA TTATTTAGAGATTCAGATATTACATTAAATATTCCTATCAAGCCCAGAAAGGGCCACTTGCTTGTGCTGGAGAACTTTAATGACCTTAAATTGAATCATG GCACAATGGAAGTTGGTTATGTTGGCCATAAAGATGCGGCAGTAAAACATGACAAAACAGATTTAGAACCACTGGATCATGATCAATCATTGTTTGTCGC AATGGGAGCCACTACTGATGCTATGGGCAACCTTGTTCTTGGAAGCAGCCGCGAGTTTGCTGGATTCAACACTGAACTGGAAGAGTCTGTTATAAATCGT ATATGGAATAGAGCTGGAGAGTTCTTCCCTAAGTTGAAGGGAAAATCCCTTGGAGATCTCACGGCGGACAGAAAAGTGAGGATAGGCTTACGCCCTTACA TGCCTGACGGGAAACCAGTGATAGGGCCTGTGCCCACTATGTCGAATATTTTCATTGTTGCTGGGCATGAAGGTGGAGGACTTTCAATGGCTTTGGGAAC CGCAGAACTGGTAGCAGACATGGTAACAGGCAAGCCCAGAAGCGTCGATTCTGCCAAATTTGCTGTCCAGGGACGATGTTGA
AA sequence Show only first row Show all	>Lus10038241 pacid=23158251 polypeptide=Lus10038241 locus=Lus10038241.g ID=Lus10038241.BGIv1.0 annot-version=v1.0 MASSLSFLSWTASSPCYRDPISFQRSFPTLLNSCTESALFSSKLPATPLSCSSTPHHLRCRVLHAESATSAAFQTFDVVVIGAGIIGLTIARQLLISSDL SVAVVDKAVPCSGAAGAGQGYLWKVHLTPEDETWELVTRSHQLWEMFSESVSDQGLSPIDELGWKRTGSLLVGRTLKEAEMLKRKVKQLSAAGVKAEYLS SYELSIEEPDLVVGEDGGAAFLPDDCQLDAYRTVSYIQKANREFASEGRYAEFFHEQVTGLLSSSGSGEIDGVQISSGALISKKAIIVAAGSWTGSLTHE LFRDSDITLNIPIKPRKGHLLVLENFNDLKLNHGTMEVGYVGHKDAAVKHDKTDLEPLDHDQSLFVAMGATTDAMGNLVLGSSREFAGFNTELEESVINR IWNRAGEFFPKLKGKSLGDLTADRKVRIGLRPYMPDGKPVIGPVPTMSNIFIVAGHEGGGLSMALGTAELVADMVTGKPRSVDSAKFAVQGRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48440			FAD-dependent oxidoreductase f...		Lus10038241 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	13.2	0.8472
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	24.1	0.8430
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	29.3	0.8426
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	31.0	0.8416
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	35.1	0.8055
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	36.8	0.8220
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	37.3	0.7330
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	38.0	0.8358
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	40.2	0.8342
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	40.9	0.8003

Compare expression of checked genes

Lus10038241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.