Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22400 262 / 3e-78 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 241 / 9e-71 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT1G17420 226 / 5e-65 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 197 / 1e-54 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 162 / 1e-42 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 161 / 2e-42 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025857 [exp] 773 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10015184 [exp] 269 / 7e-81 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 262 / 1e-77 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10004915 [exp] 247 / 8e-73 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10001465 [exp] 237 / 4e-69 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10015666 [exp] 234 / 9e-68 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008202 [exp] 207 / 2e-58 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008113 [exp] 187 / 5e-51 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 186 / 1e-50 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018200 [exp] 491 / 7e-166 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 484 / 2e-163 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.013G022100 [exp] 261 / 3e-78 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 246 / 3e-72 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 236 / 1e-68 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032700 [exp] 236 / 1e-68 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032400 [exp] 233 / 9e-68 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 233 / 2e-67 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 230 / 2e-66 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 229 / 2e-66 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10038242 pacid=23158183 polypeptide=Lus10038242 locus=Lus10038242.g ID=Lus10038242.BGIv1.0 annot-version=v1.0 ATGGAGCCGTTCCAGCACCAGGAACCTCATTCAAGCTCAGAAAAGCACGCAACAGTCTGCTTCAGAAATCGGCCAGTTTCGCATGTCGCTAGCTCTATCA AGCATTGTGTTGAGGGGAAAGTAGGGATTACTCAGAGCCATGGGCAATCAAGTCCTGGGAAATCAGCATCTCTACAGCTCTACAGCAGCACCAAAGTTAA TCCAAGTACAGGCAAAGGGGAGTTGAGCAGACGTGCTTACCTGAGGCATAGAAAGAGCAAGAAGAAAGGAACCATAAGAACAACGTCATATAAGATAAAG CTCTGGATTGAGCCAGATTTTGGAACTCCAGGAGCCTTCCTCATTGCAAATCGTCACAAGCATAAGTTCTTTCTTGAGTCTGTCACCGTTGAAGTTCTAG GCCAACAGCATATCCATTTCAACTGCAGTTCTTGGATAACCCCATGGACAAGACCAAATCAGAGCGACTTTTCTTCTCAAACACTGCCTGTCATAGGTGG TTGCAGATGGCATCAATACCCTCGTAGGGGAAGAACCGGACGACCACCTAGCAACACAGATCCATTGGCCGAGAGCCTGGCTGAATCAAAACTGGATATC TATGTGCCATCAGATGAGCAGTTTAGCCCGACAAAACTATCAGAGTTTGTCTCAAACTCGATTGGCGCTACAGTACATTTTCTTGTCTCGGAAGCAAAAG CCTTGCTGAAAAATGATTATGGTAACTTTAAGTCATTTGACGACTTACGTGAACTGTTTGCTGCCAAGAGAAGTCAGGCGGTAGAGAAACAGGTTAGGGA GAAACTAGTACCAGAGGATCTTCTCAAAGAGATTAGTCACAGGAGCAAAGAAGAGGCGGCCAAATTTCCACTGCCACAAATTATAGCAGAGAACGAGGTG GCCTGGATGGATGATGCGGAGTTTGCAAAACAAATGCTTGCAGGAGTAAATCCAACGAATACAGTGTTTGCAGAGCTGTTCACAAACCGAATCGAGCCGA ATTTCGATGTGCTCAACCTTGGCTTGGAATTCCCTCCAAAAGGAAAACACTCAGTGAGCACAATCAAGGCATCAGACATCGCAAATAACCATGACGGTCT GAATCTTATCGAGGCAATGGAGCAATGGAGGATATTCATATTGGATCATCATGATTATCTCATGCCCTTTTTGAGTAGAATAAATGCTGAGGAACTGAGC TTGCCTGGATTCTCCAGAGGAACCGCCAAGAGCAGAATAATCCGTCCAGCCACTCAAGGCACTGAAGCAGCACTCTGGCATCTTGCTAAGGCTCATGTTA CAGCCAACGACTCAGCTTATCACCAACTAGTCAGCCATTGGTTGCACACTCGTGCAATTATTGAGCCATTCATCATTGCTTCCAGAAGGCAGTTGAGTGC TCTGCATCCAATTCACCGGCTATTTGCATCCACATTTCAAAGACACCATGCACGCAAATGCATTAGCAAGAAATTTCCTTATAAACTCGGGTGGAATCCT TGA
AA sequence Show only first row Show all	>Lus10038242 pacid=23158183 polypeptide=Lus10038242 locus=Lus10038242.g ID=Lus10038242.BGIv1.0 annot-version=v1.0 MEPFQHQEPHSSSEKHATVCFRNRPVSHVASSIKHCVEGKVGITQSHGQSSPGKSASLQLYSSTKVNPSTGKGELSRRAYLRHRKSKKKGTIRTTSYKIK LWIEPDFGTPGAFLIANRHKHKFFLESVTVEVLGQQHIHFNCSSWITPWTRPNQSDFSSQTLPVIGGCRWHQYPRRGRTGRPPSNTDPLAESLAESKLDI YVPSDEQFSPTKLSEFVSNSIGATVHFLVSEAKALLKNDYGNFKSFDDLRELFAAKRSQAVEKQVREKLVPEDLLKEISHRSKEEAAKFPLPQIIAENEV AWMDDAEFAKQMLAGVNPTNTVFAELFTNRIEPNFDVLNLGLEFPPKGKHSVSTIKASDIANNHDGLNLIEAMEQWRIFILDHHDYLMPFLSRINAEELS LPGFSRGTAKSRIIRPATQGTEAALWHLAKAHVTANDSAYHQLVSHWLHTRAIIEPFIIASRRQLSALHPIHRLFASTFQRHHARKCISKKFPYKLGWNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	0	1
AT2G15310		ATARFB1A	ADP-ribosylation factor B1A (....		Lus10002817 [exp]	2.0	0.9176
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	2.4	0.9421
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	2.4	0.9246
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	6.0	0.9198
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	6.3	0.9146
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	10.1	0.8858
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	11.0	0.9055
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	12.5	0.9111
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	15.3	0.9030
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	16.2	0.8927

Compare expression of checked genes

Lus10038242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.