Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07510 202 / 4e-66 unknown protein AT2G01580 151 / 4e-46 unknown protein AT5G05950 83 / 8e-20 MEE60 maternal effect embryo arrest 60 (.1) AT3G46890 62 / 7e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025856 [exp] 244 / 6e-83 AT3G07510 244 / 3e-83 unknown protein Lus10009873 [exp] 79 / 6e-18 AT5G05950 201 / 2e-66 maternal effect embryo arrest 60 (.1) Lus10016474 [exp] 77 / 3e-17 AT5G05950 183 / 3e-59 maternal effect embryo arrest 60 (.1) Lus10040757 [exp] 75 / 2e-15 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10000398 [exp] 48 / 3e-07 AT5G05950 130 / 2e-39 maternal effect embryo arrest 60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176000 [exp] 216 / 1e-71 AT3G07510 207 / 2e-68 unknown protein Potri.002G239500 [exp] 211 / 2e-69 AT3G07510 202 / 8e-67 unknown protein Potri.014G176300 [exp] 110 / 4e-30 AT3G07510 144 / 1e-43 unknown protein Potri.014G176400 [exp] 90 / 4e-22 AT3G07510 122 / 1e-34 unknown protein Potri.010G196100 [exp] 87 / 3e-21 AT5G05950 181 / 2e-58 maternal effect embryo arrest 60 (.1) Potri.009G038500 [exp] 76 / 4e-17 AT5G05950 150 / 2e-46 maternal effect embryo arrest 60 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038243 pacid=23158463 polypeptide=Lus10038243 locus=Lus10038243.g ID=Lus10038243.BGIv1.0 annot-version=v1.0 ATGCAAAAAGAAACAAACTTTGATCAATCAAATATGTTTTCTGATAATGGATTACGCCGCCCTCTTCTATCTCCCAAAACCTCCTATTACGAGGAGAACA ACACGACGACCACCAGAAGGGTACAGTCGTCATCTTCTTCCGCCGCCGCCACCACCAGCGTCCACGTCACTGCCCTGGACGGCCTGGTCAACGTCAACTC CTTATTCACAATCGCTGTGTTCGTCGGACTGTCATTCACCACCCCTGGTCAACGCAGCCTGGAGAATCGGACATCGTGCGACGCGGGGATCGAGGAGGCG AAGAAGCTGTTGGTGTTCGAGGTGCTATCTTTCAGCTTCTTCCTATTCTCTTCATTGGTGGCGCAGGGTTTGAAGCTGGCGATCAATTTGCTGAACAGCA AGGACGTGGATGAGGCGTTCAAGGCCCACATTAACATAAAGGTGCTGAGATTCGGGATGATGGGTTCCGCGATAGGGTCGGTTCTCGGGTGCGTGTTCTT GGTGTTGTCGATGGTGAATGTGATTGAAATTCGGCTGGGTTTGTTGTCTTGTGGGAGTAAGAGCGCGATTCATGCTGTTTCGGCGCTGGTTTTGCTGGTT TCGTCTGCGCTCTTGTGTTATATATCCACTGCTGTCTATGCTTTCTTGCACTGA
AA sequence Show only first row Show all	>Lus10038243 pacid=23158463 polypeptide=Lus10038243 locus=Lus10038243.g ID=Lus10038243.BGIv1.0 annot-version=v1.0 MQKETNFDQSNMFSDNGLRRPLLSPKTSYYEENNTTTTRRVQSSSSSAAATTSVHVTALDGLVNVNSLFTIAVFVGLSFTTPGQRSLENRTSCDAGIEEA KKLLVFEVLSFSFFLFSSLVAQGLKLAINLLNSKDVDEAFKAHINIKVLRFGMMGSAIGSVLGCVFLVLSMVNVIEIRLGLLSCGSKSAIHAVSALVLLV SSALLCYISTAVYAFLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07510			unknown protein		Lus10038243 [exp]	0	1
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	7.1	0.8507
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	11.7	0.8522
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	12.8	0.8450
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	14.1	0.8251
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	19.6	0.8300
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	25.9	0.8380
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	29.0	0.8206
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	35.5	0.8230
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10033609 [exp]	42.0	0.8251
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	43.2	0.8279

Compare expression of checked genes

Lus10038243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.