Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19160 370 / 4e-125 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025855 [exp] 503 / 1e-179 AT4G19160 303 / 3e-101 unknown protein Lus10024153 [exp] 44 / 0.0003 ND 49 / 5e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G033300 [exp] 457 / 3e-159 AT4G19160 522 / 0.0 unknown protein Potri.001G193400 [exp] 449 / 7e-156 AT4G19160 516 / 0.0 unknown protein Potri.001G027600 [exp] 47 / 3e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038244 pacid=23158482 polypeptide=Lus10038244 locus=Lus10038244.g ID=Lus10038244.BGIv1.0 annot-version=v1.0 ATGTTGGTTAACTCAACACTGACTTGTACTGCAGCCACTATGTCAGCAGTTCCATGCGGTCTTTCTGCTAGCAGGTATGATCATGATCGTCTTTGGAGGC CGAGGAGAAGGAACCTGTTCCCTTGGATTAAAAATGTGACTCCTATTGTTTCCGCTTCAGCTTCCCCTGTTTCTCCCAATCCGATGACCAAGGGCTCAGC CCACCTCAAAATGTATCACGAGGTTGCAAAATCTGCAAGGCATAAGTTCACTCAAGAAGTTTCTTTCCAGCCCAAGGACAAAGACATCTCTCTTGCAAGG GCTCTGCTGTACATTGCAGCTGAGGATGAGGCATTAATAGCTTCCAATCAAGAAGTGGATGTTCAAACATTGCTCAATGAAAGAACGAATGCGTCAATAC AATCTCATGTTCCAGACTGGGATAGTGTGGAGCAGATGCCATTATCTGGGAAGACAATTACGGGTTGGCTTGAGGAGTTAGATTTTATTGCAAAAGAAGT TCAGGCAGAGCTAGTTTCAAGAGAGATCGGATGCCATCTGGTTGAAGTTTTGGATGCAATAAACTTAGTTCTTTTTGAAAGTAGAGCCTTCAAGAGGTCT TCTGTTACTGATTCCAAGTGTTCATACTTGCACAGTGTTCTGAGCACTGGTTCTGGCAATGCAATTTTGCTTAGCATAATTTACATTGAAGTTTGTAGAC GACTCGGCATAACCATTGTGGGATCTCGGGTTGGGGAAGAGTTTTTAATATGGCCCCAAACAGAGAATCCAGAGGAGCTTTTCAGGGTAACTGAAGGACA CAGCATGTTTGCTATTGTTAATGGGAAGTGTGTGGAGGATCCTAGGTCAAGGGCCTCGGATTTAACAAGTGGTTCTCTTTCAGGACTTGAGATTGCTTCA AAGCGAGACATAATCGGAATTGCTCTGGCCAATTTGATTAGGCTTCACTGGAAACGTGCTTCGAGGTCTAATCGTGGATTGATGTTGACCTCTCCACTAA GACATGTTCAAAATAGCAATGAACAATTGAGTAGTTCCAATGTACCTCTGCTTCGGCCTCAAGATCTCAGAAAGGCTGTTGATATTGCAGCCGCACAATT GGTCGTTGAGGAGAGACCACGGGATGATGTTGTACTACAGCAGGGAGTACGGGAAGGCGGTGCAAGAGCTGAGTATATGCATGGCATTTGCACCAGAAGA AGAAGCACAAGTTCTGGAGCCCTTTGTGGAGAAGCTGCATCTTTTGCGACTCGAGTCTTCCTGGAAATCGTTAGGCCACTCGGGACAACTAACTGTTACT TGAGACTTGAGAGGGCAGTGATGCATGCAGAAGAAATCGTTGCGAATCTGAATCCTTAA
AA sequence Show only first row Show all	>Lus10038244 pacid=23158482 polypeptide=Lus10038244 locus=Lus10038244.g ID=Lus10038244.BGIv1.0 annot-version=v1.0 MLVNSTLTCTAATMSAVPCGLSASRYDHDRLWRPRRRNLFPWIKNVTPIVSASASPVSPNPMTKGSAHLKMYHEVAKSARHKFTQEVSFQPKDKDISLAR ALLYIAAEDEALIASNQEVDVQTLLNERTNASIQSHVPDWDSVEQMPLSGKTITGWLEELDFIAKEVQAELVSREIGCHLVEVLDAINLVLFESRAFKRS SVTDSKCSYLHSVLSTGSGNAILLSIIYIEVCRRLGITIVGSRVGEEFLIWPQTENPEELFRVTEGHSMFAIVNGKCVEDPRSRASDLTSGSLSGLEIAS KRDIIGIALANLIRLHWKRASRSNRGLMLTSPLRHVQNSNEQLSSSNVPLLRPQDLRKAVDIAAAQLVVEERPRDDVVLQQGVREGGARAEYMHGICTRR RSTSSGALCGEAASFATRVFLEIVRPLGTTNCYLRLERAVMHAEEIVANLNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19160			unknown protein		Lus10038244 [exp]	0	1
AT4G19160			unknown protein		Lus10025855 [exp]	1.0	0.9769
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	4.6	0.9643
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	4.9	0.9523
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	5.1	0.9500
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10001598 [exp]	5.3	0.9491
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	5.7	0.9657
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10025260 [exp]	7.1	0.9505
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10003821 [exp]	7.3	0.9565
AT5G66930			unknown protein		Lus10019643 [exp]	9.8	0.9501
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	10.6	0.9529

Compare expression of checked genes

Lus10038244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.