Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17060 320 / 2e-113 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 315 / 4e-111 ATARFB1C ADP-ribosylation factor B1C (.1) AT1G70490 202 / 9e-67 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 202 / 9e-67 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 202 / 9e-67 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 201 / 1e-66 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G47170 201 / 2e-66 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 201 / 3e-66 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G24765 194 / 1e-63 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G15310 188 / 4e-61 ATARFB1A ADP-ribosylation factor B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009571 [exp] 342 / 6e-122 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 340 / 5e-121 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10030884 [exp] 206 / 4e-68 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 204 / 5e-67 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 201 / 2e-66 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 203 / 7e-66 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 202 / 3e-63 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 203 / 1e-60 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10002817 [exp] 178 / 2e-57 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088800 [exp] 342 / 3e-122 AT5G17060 370 / 9e-133 ADP-ribosylation factor B1B (.1) Potri.019G052200 [exp] 339 / 7e-121 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Potri.005G007400 [exp] 202 / 8e-67 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 202 / 8e-67 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 202 / 8e-67 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 202 / 9e-67 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 202 / 9e-67 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 202 / 9e-67 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 202 / 9e-67 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 202 / 1e-66 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10038245 pacid=23158397 polypeptide=Lus10038245 locus=Lus10038245.g ID=Lus10038245.BGIv1.0 annot-version=v1.0 ATGGGCCAAGCTTTCCGCAGGCTCTTTGATTCCTTCTTCGGCAATACCGACATGCGGGTTGTGATGCTGGGGCTGGATGCCGCAGGTAAAACAACCATAC TCTACAAGCTACACATTGGAGAAGTTCTATCTACTGTCCCAACAATAGTTTGGGATGTTGGAGGACAAGAAAAATTCCGGCCGCTTTGGAGGCATTATTT TAATAATACTGATGGATTGATATACGTTGTTGATTCTTTGGATCGAGAGAGGATTGGCAAAGCAAAGGCAGAGTTCCAGGCAATAATCAAAGATCCATTT ATGCTCAACAGTGTCATTTTGGTGTTTGCCAACAAGCAGGATATGAAAGGTGCAATGACTCCAATGGAAGTATGCCAAGGATTAGGGCTTTTCGAACTAG AGAAGAGAAAATGGCACATACAAGGAACATGTGCAGTAAGAGGAGATGGACTATACGAGGGTTTGGACTGGTTAGCTAATACTCTGAAAGATATGAGAGC TGCTGGATACTCTTCTGTTGGAACCTCATCATTTTAA
AA sequence Show only first row Show all	>Lus10038245 pacid=23158397 polypeptide=Lus10038245 locus=Lus10038245.g ID=Lus10038245.BGIv1.0 annot-version=v1.0 MGQAFRRLFDSFFGNTDMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIVWDVGGQEKFRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQAIIKDPF MLNSVILVFANKQDMKGAMTPMEVCQGLGLFELEKRKWHIQGTCAVRGDGLYEGLDWLANTLKDMRAAGYSSVGTSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10038245 [exp]	0	1
AT4G39100		SHL1	short life, PHD finger family ...		Lus10041960 [exp]	5.5	0.8835
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	11.5	0.8700
AT1G04555			unknown protein		Lus10014458 [exp]	12.8	0.8846
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	17.2	0.8705
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	20.1	0.8701
AT5G03460			unknown protein		Lus10023922 [exp]	34.0	0.8566
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	34.6	0.8514
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	35.8	0.8588
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	39.2	0.8616
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	43.7	0.8497

Compare expression of checked genes

Lus10038245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.