Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 181 / 4e-54 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT5G17030 153 / 1e-43 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT1G30530 148 / 9e-42 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT5G17040 142 / 1e-39 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 57 / 4e-09 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 55 / 2e-08 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 54 / 3e-08 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 52 / 9e-08 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 47 / 6e-06 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT2G16890 40 / 0.0008 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025854 [exp] 315 / 3e-106 AT5G17050 523 / 0.0 UDP-glucosyl transferase 78D2 (.1) Lus10041055 [exp] 56 / 6e-09 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024583 [exp] 54 / 5e-08 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 53 / 7e-08 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10021437 [exp] 52 / 2e-07 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 51 / 4e-07 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 50 / 6e-07 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 50 / 7e-07 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 49 / 2e-06 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118700 [exp] 187 / 1e-56 AT5G17050 533 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.013G143900 [exp] 185 / 8e-56 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.018G096000 [exp] 144 / 4e-40 AT5G17050 408 / 1e-139 UDP-glucosyl transferase 78D2 (.1) Potri.009G133300 [exp] 127 / 6e-34 AT5G17050 371 / 8e-125 UDP-glucosyl transferase 78D2 (.1) Potri.009G078400 [exp] 123 / 2e-32 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.006G171100 [exp] 117 / 2e-30 AT5G17050 392 / 2e-133 UDP-glucosyl transferase 78D2 (.1) Potri.006G171268 [exp] 116 / 6e-30 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 56 / 7e-09 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.002G098300 [exp] 50 / 9e-07 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.005G073766 [exp] 49 / 1e-06 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038246 pacid=23158316 polypeptide=Lus10038246 locus=Lus10038246.g ID=Lus10038246.BGIv1.0 annot-version=v1.0 ATGCCGCCGCCGGCAACCATCCCCGACGGGCCCCACGTCGTAGTGCTGCCATTCCCGTTCGGCACCCACGCCGCGCCTCTCTTGGCGGTGGTGAGGCGCC TGGAAGCCCTGTCTCCGGCGACGCATTTCTCCTTCTTCGGCACCGAGCAATCCAACGCCCCCGCATTCAAGAGCCAATCCGCCGACGCGTCGGAATCACC CAATCTCCGGGCCCACGTGGTGTGGAACGGGATCCCAGAGGGATACGAGTTGACGGGGAGGCCTCAGGAGGCGATCGAAATGTTCATGAAGGCGGCTCCG GGGGAATTCAGGAAAGGGATTGAGGCGGCGGTGGAGGAGTCAGGGCGGAAAGTGAGCTGGCTGGTGACGGATGCGTTCTACTGGTTCGCGTCGGAGATGG GGATACCGTGGATTGCATTCTGGACAGCTGGACCCAATTCGCTTTCAGCGCATCTCCACACCGATCATCTGAGGGAAGCGCTTGGTAATGTTCCAGTGAT AGAAAGGGACGTTGAAGTACACGATATCGAAGACCGTAAGGAGGATGAGATGGCTAAGACAAAGCCGGTTCTAAATCTGATGCAGACGGGCGAGACTACA AGGTCCAATCCATCGAAATTACCAAGGAAGTGCATGATTCTGGAGCAAAGGAGGCACAGGCAGGCCAACCTTCAGGGGCTTGCCCATCGACATAAACAGT TTTGGCACAACGGAGGCGGGTCACCTCGCGTAGACAACGGCTGA
AA sequence Show only first row Show all	>Lus10038246 pacid=23158316 polypeptide=Lus10038246 locus=Lus10038246.g ID=Lus10038246.BGIv1.0 annot-version=v1.0 MPPPATIPDGPHVVVLPFPFGTHAAPLLAVVRRLEALSPATHFSFFGTEQSNAPAFKSQSADASESPNLRAHVVWNGIPEGYELTGRPQEAIEMFMKAAP GEFRKGIEAAVEESGRKVSWLVTDAFYWFASEMGIPWIAFWTAGPNSLSAHLHTDHLREALGNVPVIERDVEVHDIEDRKEDEMAKTKPVLNLMQTGETT RSNPSKLPRKCMILEQRRHRQANLQGLAHRHKQFWHNGGGSPRVDNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10038246 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	11.4	0.6738
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	12.5	0.7599
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	16.6	0.7288
AT1G72200			RING/U-box superfamily protein...		Lus10029794 [exp]	17.1	0.6738
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	21.1	0.7108
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	26.9	0.7075
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	38.1	0.7073
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	40.4	0.6690
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	40.5	0.6875
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	41.7	0.6821

Compare expression of checked genes

Lus10038246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.