Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 186 / 3e-56 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT5G17030 176 / 1e-52 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT5G17040 173 / 2e-51 UDP-Glycosyltransferase superfamily protein (.1) AT1G30530 165 / 1e-48 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT2G43840 78 / 2e-16 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G29740 77 / 5e-16 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT5G59590 75 / 2e-15 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT1G05675 74 / 4e-15 UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 73 / 4e-15 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT2G29750 74 / 5e-15 UGT71C1 UDP-glucosyl transferase 71C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040246 [exp] 88 / 6e-20 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10006353 [exp] 81 / 3e-17 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10025741 [exp] 79 / 1e-16 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10003455 [exp] 79 / 1e-16 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10024117 [exp] 79 / 1e-16 AT1G05675 385 / 4e-130 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 78 / 2e-16 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10013919 [exp] 77 / 2e-16 AT1G22380 318 / 2e-106 UDP-glucosyl transferase 85A3 (.1) Lus10031068 [exp] 77 / 3e-16 AT3G22250 355 / 5e-120 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 77 / 6e-16 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118700 [exp] 201 / 2e-62 AT5G17050 533 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.013G143900 [exp] 188 / 3e-57 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 132 / 8e-37 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.006G171100 [exp] 132 / 6e-36 AT5G17050 392 / 2e-133 UDP-glucosyl transferase 78D2 (.1) Potri.006G171268 [exp] 129 / 8e-35 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.018G096000 [exp] 127 / 3e-34 AT5G17050 408 / 1e-139 UDP-glucosyl transferase 78D2 (.1) Potri.006G171128 [exp] 117 / 5e-32 AT5G17050 254 / 1e-82 UDP-glucosyl transferase 78D2 (.1) Potri.009G078400 [exp] 109 / 1e-27 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.009G133300 [exp] 107 / 7e-27 AT5G17050 371 / 8e-125 UDP-glucosyl transferase 78D2 (.1) Potri.009G095200 [exp] 90 / 1e-20 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10038247 pacid=23158152 polypeptide=Lus10038247 locus=Lus10038247.g ID=Lus10038247.BGIv1.0 annot-version=v1.0 ATGTCAAAGTTGAGATTCCGCGACCTGCCGGAAGGAGTAGTAAAGGGCAACTTGCAATCCATCTTCTCCACAATGCTCCACAACATGGCTACACATCTAC CCAAAGCAGCCGCCGTCTTCATCAACTCATTCCACGCCCTTGACCCAACCATCACCGATGACTTGGCTTCCAAGCTAACCAACTTCCTCAACATCGGCCC TTTCCATCTCCTCTACCCATTGCCGGCCAGCAAGGAACAACAACAAGCATCCGATTGTATCTCATGGCTCAACGACCAAAGACACCCACCAGCATCAGTC GCCTACTTGAGCTTCGGGTCAGTGGTGACGCCCCCACCACAGGAGCTGGCCGCAGTGGCAGAGGTGTTGGAAGCTAGCCAAGTACCCTTTATATGGTCAC TTAAGGAACATTCCAAGGCTCATCTTCCAGATGGGTTCCTGGAGAGGAGCAAAGGGAATGGGGTCGTGGTGCCATGGGCTCCTCAGACTGAGGTTTTGGG TCATCAAGCTGGGGGGTGTTTTCATCACTCATTGCGGATGGAACTCAGTGCTGGAGAGCATTGCAGGAGGGGTGCCGATGATCTGCAGGCCGTTTTTCGG CGACAAGATAATCAACAGTCAGATGGTGGAGCAAGTACGGGAGATCGGTGTCAACTTGGAAGGCGGAGTGTTTACCAAGAGTGGGCTGGCAAGTTGTTTG GATAA
AA sequence Show only first row Show all	>Lus10038247 pacid=23158152 polypeptide=Lus10038247 locus=Lus10038247.g ID=Lus10038247.BGIv1.0 annot-version=v1.0 MSKLRFRDLPEGVVKGNLQSIFSTMLHNMATHLPKAAAVFINSFHALDPTITDDLASKLTNFLNIGPFHLLYPLPASKEQQQASDCISWLNDQRHPPASV AYLSFGSVVTPPPQELAAVAEVLEASQVPFIWSLKEHSKAHLPDGFLERSKGNGVVVPWAPQTEVLGHQAGGCFHHSLRMELSAGEHCRRGADDLQAVFR RQDNQQSDGGASTGDRCQLGRRSVYQEWAGKLFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10038247 [exp]	0	1
AT3G10020			unknown protein		Lus10002842 [exp]	25.1	0.7198
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10037942 [exp]	56.0	0.6824
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	78.9	0.6941
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	117.7	0.6874
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	134.4	0.6699
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	151.7	0.6503

Compare expression of checked genes

Lus10038247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.