Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17020 1919 / 0 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) AT3G03110 1826 / 0 CRM1B, XPO1B exportin 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025853 [exp] 2157 / 0 AT5G17020 1914 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10020393 [exp] 2024 / 0 AT5G17020 1878 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10009572 [exp] 1968 / 0 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10037671 [exp] 54 / 1e-06 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Lus10001714 [exp] 45 / 0.0003 AT3G05040 1465 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10033845 [exp] 45 / 0.0005 AT3G05040 1578 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088600 [exp] 2015 / 0 AT5G17020 1924 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.019G052100 [exp] 2012 / 0 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein CL0020 [flax] [poplar] TPR PF08767 [flax] [poplar] CRM1_C CRM1 C terminal CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038248 pacid=23158330 polypeptide=Lus10038248 locus=Lus10038248.g ID=Lus10038248.BGIv1.0 annot-version=v1.0 ATGGCCTCCCTCGCTATGGCCGCCGAGAGGCTCCGGGATTTGTCTCAACCAATTGATGTCTCCTTGCTCGATGCCACCGTCGCTGCTTTCTACCGCACCG GATCTAAGGAGGAGAGGGCAGCTGCAGATAAGATTTTGCAAGAATTGCAAAGCAATCAGGATATGTGGCTTCAAGTGGTGCACATTTTGCAGAGCACAAA GAATCTGGATACCAAGTTCTTTGCATTGCAGGTCCTAGAGGGTGTCATAAAGTACCGATGGAACGCCTTGCCTGCAGAGCAACGGGATGGAATGAAGAAT TACATATCTGAAGTCATTGTGCAGCTTTCAAGTGATGAGGCTTCTTTTCGTCAAGAGAGGTTGTATGTGAACAAGCTCAATGTCATTTTAGTACAGATTT TGAAGCATGAGTGGCCATCTAAGTGGCGGAGTTTTATTCCTGATCTTGTTGCAGCAGCGAAAACCAGTGAAACGATTTGTGAGAATTGCATGGTTATCTT GAAACTTCTGAGTGAAGAAGTCTTTGATTTCTCTAGAGGAAAGATGACTCAACAAAAGATAAAGGAACTAAAACAATCGTTGAACAGTGAGTTTCAACTC ATTCATGAGTTGTGCTTATATGTACTGTCCGTGTCTCAAAGAACAGAGCTGATTCGAGCTACACTGTCCACTTTACATGCTTTTCTCTCATGGATTCCAT TGGGCTATATTTTTGAGTCCCCATTGCTTGAAACACTTCTGAAGTTTTTCCCAATGCCATCATATAGAAATTTGGCCGTTCAATGTCTGACTGAGGTCGC TGCTCTTAGTTTTGGTGACTTCTACAATCCGCAGTATATCAAGATGTACAACATTTTTATGGTCCAGTTGCAGGCCATACTGCCTCCGGCCACAAATATT CCAGATGCATATGCTAATGGGTCTAGTGAGGAGCAGGCATTTATTCAGAATTTGGCTCTGTTTTTCACATCCTTCTACAAGGCAAGTTTCCTATCTAGAT TCTCTTTGCACATTGCTGATGGGAAGCATGAGTCCCTTGATGTGACAATAACTAGATTTTCTTATTGGGTTCATATTCGGATACTGGAGTCTAGTCAGGA AAACGTATCAGCTCTTCTGATGGGTCTTGAATATCTCATTAACATTTCATATGTTGACGATACTGAAGTTTTCAAGGTTTGTTTGGATTATTGGAACTCT TTGGTCTCCCAGCTCTTCGAGGCCCATCACAATCTGGACAATCCTGCAGCAACTGCGAACATGATGGGGCTGCAGACGCCATTGCTTCATGGTCTAGTTG ATGGCATAGGCTCTCAGATTATGCAGCGGAGGGAGCTGTATGCTGGTACAATGTCAAAGCTGCGAATGCTTATGATATGTCGTATGGCTAAACCGGAAGA GGTTCTCATAGTTGAAGATGAAAATGGAAATATTGTTCGTGAAACCATGAAAGACAATGATGTGCTTGTCCAATACAAGATCATGAGAGAAACTTTGATC TACTTGTCACACCTTGATCACGAAGACACAGAAAAGCAGATGTTGAGAAAGTTGAGCAAACAACTAACTGGGGAGGATTGGAGTTGGAACAACTTAAACA CTCTATGTTGGGCGATTGGATCCATCTCTGGTTCCATGATGGAAGAACAGGAAAACAGATTTCTGGTTATGGTCATCCGTGACTTGTTGAATTTGTGTGA AATCACAAAAGGAAAAGACAACAAAGCTGTTATCGCCAGTAATATTATGTATGTTGTTGGGCAGTATCCCAGATTTCTTCGTGCTCATTGGAAGTTTCTG AAAACTGTTGTCAATAAACTATTCGAGTTCATGCATGAGACTCATCCAGGAGTTCAGGATATGGCTTGTGATACCTTCCTGAAAATTGTTCAAAAATGCA AGCGGAAGTTTGTTATTGTTCAGGTTGGAGAAAGTGAACCATTTGTATCTGAACTTTTGACTGGCCTAGCAGCCACTGTTGGTGATCTTGAACCTCATCA AATTCATACGTTCTATGAATCTGTTGGACAAATGATTCAAGCAGAATCTGATCTTCAGAAGAGAGATGAATACTTGCAGCGGCTAATGAAGCTTCCAAAC GAGAGATGGGCGGAGATTTTAGCACAAGCTCGTCAGAGTGTTGATTTTTTGAAAGACCAAGATGTCATTCGAACTGTGCTTAATATATTACAGACAAATA CAAGTGTTGCAACTTCTCTTGGGACTTACTTCTTACCCCAAATAACGTTGATCTTTCTGGATATGCTTAATGTATACAGAATGTATAGTGAACTTATATC AAGTAACATTGCAAATGGAGGACCTTACGCATCACGGACATCATATGTTAAATTATTAAGGTCTGTTAAGAGGGAGACACTGAAGCTCATTGAGACCTTT TTGGACAAGGCTGAGGACCAGCCACAAATTGGGAAGCAATTTGTGCCGCCAATGATGGATCCTGTTCTTGGGGATTATGCTAGGAATTTGCCTGATGCTA GAGAATCCGAAGTTCTCTCACTATTTGCAACAATTATAAACAAGTACAAAGCTACAATGATAGATGATGTTCCACGCATTTTTGAAGCTGTTTTTCAGTG TACTTTGGAGATGATTACAAAAAATTTCGAAGACTACCCGGAGCATCGCCTCAAGTTCTTTTCACTACTACGTGCAATTGCAACCCATTGCTTCCCTGCT TTGATCCATTTGTCCAGTCCGCAACTAAAGCTTGTAATGGATTCAATCATATGGGCTTTCCGTCATACTGAAAGGAATATAGCTGAGACGGGGCTGAACT TGTTATTAGAGATGTTGAGGAACTTCCAGATGTCTGAGTTCTGTAATCAGTTCTACCAGACCTACTTTGTGACGATCGAGCAAGAGATTTTTGCAGTGCT GACGGACACATTTCATAAACCTGGGTTCAAGTTGCATGTCTCAGTGCTACAGAACTTGTTCTGCCTGGTTGAGAGTGGTAAACTAACAGAGCCTTTGTGG GATGCTGCAACAGTTCCTTATCCATATCCTAACAATGCCATGTTTGTCAGAGAGTATACTATCAAGCTTCTGGGAACTTCGTTCCCCAACATGACTGTGG CAGAGGTCGGTCAATTTGTGAATGGGTTATTTGAGTCGAGAATGGACTTGTCTGGATTTAAAGATCGGATAAGAGACTTCCTTGTGCAATCAAAAGAGTT TTCAGCTCAGGACAATAAGGATCTTTATGCTGAAGAGGCTGCTGCTCAGAGAGAAAGGGATAGACAGCGAATGCTATCTATTCCGGGGCTTATCGCCCCT AACGAGATACAAGATGAGATGTTGGATTCGTAG
AA sequence Show only first row Show all	>Lus10038248 pacid=23158330 polypeptide=Lus10038248 locus=Lus10038248.g ID=Lus10038248.BGIv1.0 annot-version=v1.0 MASLAMAAERLRDLSQPIDVSLLDATVAAFYRTGSKEERAAADKILQELQSNQDMWLQVVHILQSTKNLDTKFFALQVLEGVIKYRWNALPAEQRDGMKN YISEVIVQLSSDEASFRQERLYVNKLNVILVQILKHEWPSKWRSFIPDLVAAAKTSETICENCMVILKLLSEEVFDFSRGKMTQQKIKELKQSLNSEFQL IHELCLYVLSVSQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLAVQCLTEVAALSFGDFYNPQYIKMYNIFMVQLQAILPPATNI PDAYANGSSEEQAFIQNLALFFTSFYKASFLSRFSLHIADGKHESLDVTITRFSYWVHIRILESSQENVSALLMGLEYLINISYVDDTEVFKVCLDYWNS LVSQLFEAHHNLDNPAATANMMGLQTPLLHGLVDGIGSQIMQRRELYAGTMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLI YLSHLDHEDTEKQMLRKLSKQLTGEDWSWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGESEPFVSELLTGLAATVGDLEPHQIHTFYESVGQMIQAESDLQKRDEYLQRLMKLPN ERWAEILAQARQSVDFLKDQDVIRTVLNILQTNTSVATSLGTYFLPQITLIFLDMLNVYRMYSELISSNIANGGPYASRTSYVKLLRSVKRETLKLIETF LDKAEDQPQIGKQFVPPMMDPVLGDYARNLPDARESEVLSLFATIINKYKATMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPA LIHLSSPQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLRNFQMSEFCNQFYQTYFVTIEQEIFAVLTDTFHKPGFKLHVSVLQNLFCLVESGKLTEPLW DAATVPYPYPNNAMFVREYTIKLLGTSFPNMTVAEVGQFVNGLFESRMDLSGFKDRIRDFLVQSKEFSAQDNKDLYAEEAAAQRERDRQRMLSIPGLIAP NEIQDEMLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	0	1
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	1.4	0.9374
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10012535 [exp]	1.7	0.9298
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	3.5	0.9251
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	4.0	0.9325
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	4.5	0.9234
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	6.9	0.8995
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	7.5	0.8890
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	7.5	0.9165
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	7.7	0.8882
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	7.9	0.9165

Compare expression of checked genes

Lus10038248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.