Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19210 523 / 2e-174 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29990 519 / 4e-173 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G19190 518 / 1e-172 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT1G05700 511 / 2e-170 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G19230 478 / 2e-155 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29180 467 / 1e-152 RHS16 root hair specific 16 (.1.2) AT4G29450 450 / 1e-146 Leucine-rich repeat protein kinase family protein (.1) AT1G51800 447 / 3e-145 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT1G51790 442 / 2e-143 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 442 / 3e-143 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 1211 / 0 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10036935 [exp] 296 / 7e-88 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 258 / 3e-74 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 256 / 4e-72 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023166 [exp] 250 / 5e-71 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 248 / 3e-70 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019237 [exp] 241 / 6e-68 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038172 [exp] 236 / 2e-66 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 220 / 1e-60 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G094700 [exp] 485 / 7e-160 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 467 / 8e-153 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 458 / 3e-149 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 392 / 5e-129 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.010G052800 [exp] 307 / 5e-92 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 302 / 6e-90 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G132100 [exp] 265 / 9e-77 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 262 / 1e-75 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 236 / 4e-66 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 229 / 6e-64 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038251 pacid=23158110 polypeptide=Lus10038251 locus=Lus10038251.g ID=Lus10038251.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTATCATTATTATCTGCATACCATTCACAGGAGCTGCTGCAGCTTCCAGAAGGAAACTGATGACATAGCTGACTGCGGCTTACCAGCCG GTGAGTCGTATAGAGACTCATCGACCGAGATTCCTTACATCTCAGATGAATCATTCATCGATACCGGAGTGAACGAAGAGATCTCTCCGGTATTCAACTC CGGTCATCCAACGTGGCTACGGACTGTCAGGAGTTTCCCAGAGGGGAACAGAAACTGTTACAGCTTAAGGCCTCCTGAAGGCAGGGACAAGATATACCTC ATCAGGGCCTCCTTCATGTACGGTAACTACGATAATCAGGACAGGCTCCCCGAATTCGACCTCTACCTCGGATTTAACCGGTGGAGTTCGTTGAAGCATT TCCACAACTCTACTTATACTTCCCCCTCCCAGAATGCATCTTTAGTCCTTTACCAGCCTCTCGATTTTGGATCCTTAACCAACGACATTATCAGATACAA TGATGATGCCTATGATCGGATCTGTTTTGAGCTCGACGCCGGAGAGGCGACTGTGGACTTCTCCATTTACATTCATTTTGCAGAGCTAGAGATACTCGGG GAGGGCGAATCAAGGGTGTTTGATATTTTACTCAATGGCATTGCATTGAGAAGAAATGTCGCACCAAGCTATCTCCACTCAATGACAGTCCCATCCCCAC AACCAGTGACAGGATCCAAGCTCAGCTTTCTGCTGAGCAAGTCACGGAGTTCTTCACATCCTCAATGCTCTGGAGTTGATGCTATTGAGGACATAAAGTC AACATACGGAGTTAAGAAAGGATGGCAAGGAGATCCATGTGCCCCAGTTCATCCTTGGAATGGACTCAACTGCATCAACAATGGTAATAGGCCTTACAGA ATTATTTCCTTGAATTTATCATCGAGTGGATTAAGAGAGCAAATACCTGTGTCATTGTCGAACCTTGAAATGTTAGAACACCTTGACTTGTCAAACAACA GCATATCAGGAGAAGTCCCCGACTTTCTGACACAACTAGCACATTTGAGGAACCTACAAGGGAACAGTCTCTCTGGGAAAGTGCCTTCAGCCCTCACCGA AAGATCCAATAATGGTTCACTCATCTTAAGTCTGGATGGAAACCCAAATCTCTGCCTCAAACCTCCTTGCAAGAAAGAGAAGAGTAGCGTTGTAGTTCCT GTAGTAGCCATCATTGTCCCTCTGCTGGCTATCCTCATTGTTTTACTCTTACTTTGGATCTACAAGCGAAGTAAAGACAAGAAAGCCAGGAAACCCCAAA GAGAAGGATCGGGAATGAAGCTGGATAGCAGGGAATTCACGCACCTGGAGATCGTCAGGATTACAGATAACTTCAGAAGTGTTGCAGGGAAAGGAGGGTT TGGAACAGTTTACCATGGTTACTTGGATGATGGAACAGAAGTTGCTGTCAAGATTCTATCCCCGTCCGCAACTGATGGCTCCGCTCAGTTTCAAACTGAG TACATGGCAGGTGGGAATTTGGAGAAGCATCTGTTAGATCCATCTAAACCAGTTCTGAGTTGGAAAGAGAGGATTCAGATAGCATTGGATGCTGGACAAG GTCTGGAATACCTCCATCTTGGTTGCAAACCACCAATAATCCACAGAGATGTAAAAAGCTCCAACATTCTGCTGAGCGAGAAAATGCAGGCAAAGATCGC AGATTTTGGTCTGTCAAAACTTTTCCCAGTTGAAAGCAAGAGCCATTTATCCACATCGGTCGTTGGCACCATTGGTTACCTCGATCCTGAGCTAACAGAG AAAAGCGATGTGTACAGCTTCAGGATTGTTCTCCTGGAGTTGATCACTGGACAGCCTGCAATAACAGTTGGACACAATGACAACACTCATATTGCCCAGT GGGCAAGACCCCTGATCGCGGCAGGTGACTTGAGGAATCTGGTTGATCCGAGGCTAGTTGGCAATTTTGATACAAATTCCGCCTGGAAGTTCCTGGAGGT AGCAATCTCTTGCATCCGATCCATGTCCATCCAGAGGCCAAGTATGAACTATGTGGTTGCTGAACTTAAGGAATGCCTGGAAACAGAAATTGTCAATGAG GAGTCTCAAAGTTGGGAAGAAGGGAACCTGGACGATGGAACTTATTCTATTGAAATCAATAGTACCAAAGCCTTTGAAGTAGGACAAGGCCCTCAAGCTA GGTAG
AA sequence Show only first row Show all	>Lus10038251 pacid=23158110 polypeptide=Lus10038251 locus=Lus10038251.g ID=Lus10038251.BGIv1.0 annot-version=v1.0 MASSYHYYLHTIHRSCCSFQKETDDIADCGLPAGESYRDSSTEIPYISDESFIDTGVNEEISPVFNSGHPTWLRTVRSFPEGNRNCYSLRPPEGRDKIYL IRASFMYGNYDNQDRLPEFDLYLGFNRWSSLKHFHNSTYTSPSQNASLVLYQPLDFGSLTNDIIRYNDDAYDRICFELDAGEATVDFSIYIHFAELEILG EGESRVFDILLNGIALRRNVAPSYLHSMTVPSPQPVTGSKLSFLLSKSRSSSHPQCSGVDAIEDIKSTYGVKKGWQGDPCAPVHPWNGLNCINNGNRPYR IISLNLSSSGLREQIPVSLSNLEMLEHLDLSNNSISGEVPDFLTQLAHLRNLQGNSLSGKVPSALTERSNNGSLILSLDGNPNLCLKPPCKKEKSSVVVP VVAIIVPLLAILIVLLLLWIYKRSKDKKARKPQREGSGMKLDSREFTHLEIVRITDNFRSVAGKGGFGTVYHGYLDDGTEVAVKILSPSATDGSAQFQTE YMAGGNLEKHLLDPSKPVLSWKERIQIALDAGQGLEYLHLGCKPPIIHRDVKSSNILLSEKMQAKIADFGLSKLFPVESKSHLSTSVVGTIGYLDPELTE KSDVYSFRIVLLELITGQPAITVGHNDNTHIAQWARPLIAAGDLRNLVDPRLVGNFDTNSAWKFLEVAISCIRSMSIQRPSMNYVVAELKECLETEIVNE ESQSWEEGNLDDGTYSIEINSTKAFEVGQGPQAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	1.0	0.9617
AT4G14746			unknown protein		Lus10039368 [exp]	3.5	0.9541
AT5G06730			Peroxidase superfamily protein...		Lus10008173 [exp]	6.8	0.9182
					Lus10005655 [exp]	8.7	0.9227
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10002945 [exp]	9.3	0.9075
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	19.7	0.9480
AT5G62750			unknown protein		Lus10004267 [exp]	24.7	0.8944
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	29.2	0.9331
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	29.4	0.9408
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	34.6	0.9350

Compare expression of checked genes

Lus10038251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.