Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52080 213 / 5e-61 AR791 actin binding protein family (.1) AT3G25690 130 / 2e-31 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025846 [exp] 934 / 0 AT1G52080 337 / 4e-108 actin binding protein family (.1) Lus10034382 [exp] 125 / 1e-29 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 125 / 2e-29 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047200 [exp] 380 / 1e-123 AT1G52080 348 / 3e-112 actin binding protein family (.1) Potri.001G191300 [exp] 378 / 7e-123 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.010G130800 [exp] 115 / 2e-26 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 61 / 2e-09 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 60 / 4e-09 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.005G098400 [exp] 54 / 2e-07 AT2G36650 142 / 4e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038254 pacid=23158292 polypeptide=Lus10038254 locus=Lus10038254.g ID=Lus10038254.BGIv1.0 annot-version=v1.0 ATGAGAGTGAGGGACAGAAAGGATATAAGACCCCTTCTCTTAAGATTTGGACTGGCTGTTTCTGTCTCCTTTGCTGGGTTTCTTGCTTCTCGAATAATCC ATATGGCTAAGCAGCCTCCTCCATCCCTAGATCATGGGAGTAGTGAAGCTGACGTGAGAGCAGGGGATGATGTTCATGCCATCAAAAGAACTACTTGTTC TGGTAGCATAGGTTTTGAAGGACAAGAGGACGTTTGCAGGGTGAATTTTTCTCCAAGCTGCAGGCTGACTGAAGATAAAGATGGGTACCTATTGCCAGAA CTCAATCATCTAATCAACGATTTCAGCTTCAGTTCCGTGAACAAGTGTGCTTCTCCTAAGGGAGACCCGACGATCATGCTGAGGGTAGATGCTGATACAC CTAAGGCATTTAGAAGCGTCGAGGAAGAGGACGAGGACGAGGACGAGGAGGAAGATGACAATTATCATGAAATTGAGATCAGTCATTTGAAGAACAAGGT GAGACTGCTCGAAGAGAGGGAGAGGAACCTTGAGCTACAATTACTGGAGTTGTATGGCCTTAAAGAGCAAGAAACTGCTGTGATGGAGCTTCAGAACCGT GTCAAGATAAACAGCATGGAAACTAAACTTCTCACCCTGAAAATGGAGACTTTGCAAGCAGAAAATCAGAGGCTTCAGGCTCAAGCTTCTGACCACATGA AAACCGCGTCCGAGCTTGATGCTGCAAGAGCCAAAATCAAACTGCTGAAGAAAAAGTTGAGGTCTCAAACTGAACAGAATAAGGAACAGATATTGATCCT AAAAAAGAAAGTTTCCAAGTTGCAAGAACAAGAAATCGATGCTGCTTCAAGCGATCCACAATTGCAGAGACTGAAGGATTTGGAGGTCCAAGCAGAAGAG TTGAGAAAGTCTAACTCGAAATTGCAGGAGGAGAATTCCGATCTGGCTCATCGGCTTGATGCCACACAACTCCTTGCAAATTCTGTTCTTGAAAATCCTG AGATGGAGGAACTGAGGCAACTAAGCAACCGGCTAACTGAGGAAAATATGCATTTGACGAAGGAAGCGGAGAGGGTGAAAGCAGACAGATGTTCAGATGT GGAAGAGCTAGTTTATCTTAGATGGATCAACGCCTGCCTACGGTACGAGTTGCGCAATTTCCAGGCACCTAATGGGAAAACAGCAGCAACAGACCTGAGC AAATCACTGAGTCCCGAATCCGAGGAGAAGGCGAAAAAGTTGATCCTTCAATACGCGAATGCAGAAGGTATGGGGGGAAAGGGAATGAGATTGGTTGATT TGGAGACTGATCAATGGTTGTCTTCCCAGGCATCATACATCACAGACTCCACAAACTTTGATGACAGTTCCTCTGTATCATCATCAAAGCCCCCCCACAG CCCCAGAAAGATCAAGATCTTTAAGAAACTTAGGAGGCTATTACGTGGAAAAGACGATCACCGATCATCACCATTGGAGAAAACAGCAGGAGGGATGGAA GATTCTGATTATCCTAGCAGCGTCTCAACCGGGACGGATGCAGGAAGTGATACACAATCTTTCAGAGGTCAAACACCGTTGACTTCCTACAGATACTCAA TCGACAGTCATAGAATGATCATTCCCGGGATGTATGATGCTGCCTCTGCTGTCAAGGATATCGACAGCCTGCGTGTACCGAGCAATCTGGGTTCCTCGGA TGTTCTCAGAAGATTTCCGTCATCGGGTGCAGAATCAGGTAGAGATTTCACATCTGAAAGCCATCCAAGTGAAGACCTGTACCCTACTGGGAAATCTGAC TTGGTGAGGTTTGCTGGGGTATTGAAGGATTCCAGTGGAAATAATATAACAGAGCCATGTCACAGAAAAGGGAAAAGCAGTGCCTTCTAA
AA sequence Show only first row Show all	>Lus10038254 pacid=23158292 polypeptide=Lus10038254 locus=Lus10038254.g ID=Lus10038254.BGIv1.0 annot-version=v1.0 MRVRDRKDIRPLLLRFGLAVSVSFAGFLASRIIHMAKQPPPSLDHGSSEADVRAGDDVHAIKRTTCSGSIGFEGQEDVCRVNFSPSCRLTEDKDGYLLPE LNHLINDFSFSSVNKCASPKGDPTIMLRVDADTPKAFRSVEEEDEDEDEEEDDNYHEIEISHLKNKVRLLEERERNLELQLLELYGLKEQETAVMELQNR VKINSMETKLLTLKMETLQAENQRLQAQASDHMKTASELDAARAKIKLLKKKLRSQTEQNKEQILILKKKVSKLQEQEIDAASSDPQLQRLKDLEVQAEE LRKSNSKLQEENSDLAHRLDATQLLANSVLENPEMEELRQLSNRLTEENMHLTKEAERVKADRCSDVEELVYLRWINACLRYELRNFQAPNGKTAATDLS KSLSPESEEKAKKLILQYANAEGMGGKGMRLVDLETDQWLSSQASYITDSTNFDDSSSVSSSKPPHSPRKIKIFKKLRRLLRGKDDHRSSPLEKTAGGME DSDYPSSVSTGTDAGSDTQSFRGQTPLTSYRYSIDSHRMIIPGMYDAASAVKDIDSLRVPSNLGSSDVLRRFPSSGAESGRDFTSESHPSEDLYPTGKSD LVRFAGVLKDSSGNNITEPCHRKGKSSAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	0	1
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	1.4	0.8918
AT3G13062			Polyketide cyclase/dehydrase a...		Lus10034791 [exp]	6.3	0.8677
AT3G54000			unknown protein		Lus10016465 [exp]	8.9	0.7901
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	10.5	0.8505
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	10.9	0.8116
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	12.0	0.8292
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	17.2	0.7812
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	19.0	0.7439
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	19.2	0.7731
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	19.4	0.7676

Compare expression of checked genes

Lus10038254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.