Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17420 442 / 2e-157 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 432 / 3e-153 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT2G41680 260 / 7e-84 NTRC NADPH-dependent thioredoxin reductase C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025845 [exp] 471 / 2e-170 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10006853 [exp] 467 / 8e-161 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037596 [exp] 256 / 2e-87 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10018051 [exp] 252 / 1e-81 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10042048 [exp] 253 / 7e-81 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10019550 [exp] 231 / 1e-77 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456800 [exp] 457 / 2e-163 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 440 / 1e-156 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.006G049100 [exp] 254 / 1e-81 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Potri.003G178200 [exp] 42 / 0.0004 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10038256 pacid=23158430 polypeptide=Lus10038256 locus=Lus10038256.g ID=Lus10038256.BGIv1.0 annot-version=v1.0 ATGGATCGTTGCCGTGCCCAATCCCTCCGATTCGGGACCCAGGTCTTCACCGAAACCGTGAGCAAGGTCGATTTCTCTTCCAGTCCGTTCAAGGTTTTCA CCGATTCGAAGACCGTCCTCGCCGACACCGTCGTGGTTTCCACCGGCGCAGTCGCCAAGCGGCTTCCGTTCTCCGGGTCGGAGACTTTCTGGAACCGCGG GATATCAGCCTGCGCGGTATGCGACGGCGCCGCCCCAATTTTCAGGAATAAGCCGCTGGCGGTGATCGGGGGAGGGGATTCTGCGATGGAGGAAGCGAAT TTCTTGACCAAGTACGGTAGCAAAGTGTACATCATCCACAGGAGGGATACTTTCAGGGCGTCCAAGATTATGCAGAATAGGGCCCTAACGAACCCGAAGA TAGAGGTGGTGTGGAATTCGGTGGCGGAGGAGGCCTATGGAGAGAATAAGCTTGGTGGTTTGAAGGTGAGGAATTTGGTCACGGATGAAGTCTCTGATTT GAAGGTTTCTGGACTGTTCTTTGCGATTGGGCATGAACCGGCTACGAAGTTCTTGGATGGACAGCTGGAGCTGGACTCTGACGGGTATGTAGTGACCAAG CCTGGAACCACCCAGACTAGCGTTGTTGGGGTATTCGCTGCTGGTGATGTTCAAGACAAGAAATACAGGCAGGCTATCACTGCAGCTGGCACTGGTTGCA TGGCAGCATTGGAAGCAGAGCATTACCTGCAGGAGATTGGGGCGCAGGAGAATAAGAGTGAGCCATCTAAGATGTAG
AA sequence Show only first row Show all	>Lus10038256 pacid=23158430 polypeptide=Lus10038256 locus=Lus10038256.g ID=Lus10038256.BGIv1.0 annot-version=v1.0 MDRCRAQSLRFGTQVFTETVSKVDFSSSPFKVFTDSKTVLADTVVVSTGAVAKRLPFSGSETFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEAN FLTKYGSKVYIIHRRDTFRASKIMQNRALTNPKIEVVWNSVAEEAYGENKLGGLKVRNLVTDEVSDLKVSGLFFAIGHEPATKFLDGQLELDSDGYVVTK PGTTQTSVVGVFAAGDVQDKKYRQAITAAGTGCMAALEAEHYLQEIGAQENKSEPSKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10038256 [exp]	0	1
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	2.0	0.8327
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	25.2	0.7486
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	31.0	0.7419
AT1G15230			unknown protein		Lus10025791 [exp]	35.1	0.7160
AT3G22530			unknown protein		Lus10010549 [exp]	50.5	0.7396
AT2G42310			unknown protein		Lus10042351 [exp]	51.4	0.7374
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10010507 [exp]	70.7	0.6861
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	101.5	0.6774
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	115.6	0.6856
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	120.7	0.6571

Compare expression of checked genes

Lus10038256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.